1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgagaatctttttgtagtttctgaaactgagaggaggaaagaaccattcggacatactagtactcaggaacacataggacaaatattgtacaaaataaaaagaaactttttttttctctgcaagaccgatccttccagtggaatgacaagctaatatgtctgctaataacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGAGGTGGTGGTGGTATGCTGTTCAGAGATATGGAAATCATTGGCGCTCCT
species | Oryza sativa |
transcript | LOC_Os03g11960.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGEST: gi|88518098|gb|CI445752.1|CI445752
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
EST: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGEST: gi|88906709|gb|CI375781.1|CI375781
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
EST: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGEST: gi|56158218|gb|C74673.2|C74673
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
EST: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTNGATCTGCAGTTTAACAATCTATTAGTCATGAAGCTTEST: gi|88480951|gb|CI418222.1|CI418222
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTAT-AGTCATGAAGCTT
EST: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGEST: gi|88519428|gb|CI447082.1|CI447082
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
EST: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGEST: gi|86527707|gb|CI167913.1|CI167913
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
EST: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGEST: gi|88506655|gb|CI434161.1|CI434161
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
EST: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGEST: gi|86533503|gb|CI173709.1|CI173709
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
EST: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGEST: gi|88515699|gb|CI443353.1|CI443353
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
EST: TCATGAACTCAGTAAAACAACAGGAAATCCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGEST: gi|88489650|gb|CI426922.1|CI426922
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
EST: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCG GTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
genomic: TCATGAACTCAGTAAAACAACAGGAAATGCAGGAGCAAGAATTGGATGCGgtaagtgaga ... taacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTG
aagaccgatccttccagtggaatgacaagctaatatgtctgctaataacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGAGGTGGTGGTGGTATGCTGTTCAGAGATATGGAAATCATTGGCGCTCCT
taataac putative branch site (score: 1)
taataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgagaatctttttgtagtttctgaaactgagaggaggaaagaaccattcggacatactagtactcaggaacacataggacaaatattgtacaaaataaaaagaaactttttttttctctgcaagaccgatccttccagtggaatgacaagctaatatgtctgctaataacttgtagGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGAGGTGGTGGTGGTATGCTGTTCAGAGATATGGAAATCATTGGCGCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT