1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaaatgatacattcagtctgatcaagtgtaatttcagtggtatgatgtcagtttttttctttaatgtaacaagttcataaaaagtagttccatttgacagCTAACAGGCGATGGAGAGGAAAAGTATCTCATAGCTACATCTGAGCAACCGTTGTGTGCGTATCATCTTGGTGATCGAATTTATCCTGCTGAATTGCCAA
species | Oryza sativa |
transcript | LOC_Os03g10190.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCATGGGAAAATGTGCCCAGTTGGCCCAATTCGACGAAGAGCTTTACAAG CTAACAGGCGATGGAGAGGAAAAGTATCTCATAGCTACATCTGAGCAACCGEST: gi|27554187|gb|CA998087.1|CA998087
genomic: CCATGGGAAAATGTGCCCAGTTGGCCCAATTCGACGAAGAGCTTTACAAGgcaagacaaa ... catttgacagCTAACAGGCGATGGAGAGGAAAAGTATCTCATAGCTACATCTGAGCAACCG
EST: GGAAAATGTGCCCAGTTGGCCCAATTCGACGAAGAGCTTTACAAG CTAACAGGCGATGGAGAGGAAAAGTATCTCATAGCTACATCTGAGCAACCG
genomic: GGAAAATGTGCCCAGTTGGCCCAATTCGACGAAGAGCTTTACAAGgcaagacaaa ... catttgacagCTAACAGGCGATGGAGAGGAAAAGTATCTCATAGCTACATCTGAGCAACCG
tgtcagtttttttctttaatgtaacaagttcataaaaagtagttccatttgacagCTAACAGGCGATGGAGAGGAAAAGTATCTCATAGCTACATCTGAGCAACCGTTGTGTGCGTATCATCTTGGTGATCGAATTTATCCTGCTGAATTGCCAA
atgtaac putative branch site (score: 12)
ttccattt putative PPT
tttttttctttaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatgatacattcagtctgatcaagtgtaatttcagtggtatgatgtcagtttttttctttaatgtaacaagttcataaaaagtagttccatttgacagCTAACAGGCGATGGAGAGGAAAAGTATCTCATAGCTACATCTGAGCAACCGTTGTGTGCGTATCATCTTGGTGATCGAATTTATCCTGCTGAATTGCCAA
- - - - -cattcag
- - - - - - - - - - - - - - - - - - - - tatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa