1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatctcaatggcagggtttttgttatagtcttcaattttcttcataccattcgtataatattttctgaacttcaatgtaggttgagTTTAATAAGGCTGCACAGTCTTTAACTGATGCAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAG
species | Oryza sativa |
transcript | LOC_Os03g07080.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGCTACTTTCTTTCGAAGGGACAAATTTTCACATGTCAAAAAATACGAG GEST: gi|218492164|gb|FG954134.1|FG954134
genomic: GTGCTACTTTCTTTCGAAGGGACAAATTTTCACATGTCAAAAAATACGAGgtatctcaat ... gtaggttgag-
EST: GTGCTACTTTCTTTCGAAGGGACAAATTTTCACATGTCAAAAAATACGAG GEST: gi|58612497|gb|CK040209.1|CK040209
genomic: GTGCTACTTTCTTTCGAAGGGACAAATTTTCACATGTCAAAAAATACGAGgtatctcaat ... gtaggttgag-
EST: GTGCTACTTTCTTTCGAAGGGACAAATTTTCACATGTCAAAAAATACGAGG TTGAGTGGGTAAGGCTGCACAGTCTTTAACTGATGCAATTATTCCAGCTGEST: gi|29678434|gb|CB674709.1|CB674709
genomic: GTGCTACTTTCTTTCGAAGGGACAAATTTTCACATGTCAAAAAATACGA-Ggtatctcaat ... gtaggttgagTT---T-AATAAGGCTGCACAGTCTTTAACTGATGCAATTATTCCAGCTG
EST: GTGCTACTTTCTTTCGAAGGGACAAATTTTCACATGTCAAAAAATACGAG GEST: gi|29678434|gb|CB674709.1|CB674709
genomic: GTGCTACTTTCTTTCGAAGGGACAAATTTTCACATGTCAAAAAATACGAGgtatctcaat ... gtaggttgag-
EST: GTGCTACTTTCTTTCGAAGGGACAAATTTTCACATGTCAAAAAATACGAG G
genomic: GTGCTACTTTCTTTCGAAGGGACAAATTTTCACATGTCAAAAAATACGAGgtatctcaat ... gtaggttgag-
tcaattttcttcataccattcgtataatattttctgaacttcaatgtaggttgagTTTAATAAGGCTGCACAGTCTTTAACTGATGCAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAG
attcgtataatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctcaatggcagggtttttgttatagtcttcaattttcttcataccattcgtataatattttctgaacttcaatgtaggttgagTTTAATAAGGCTGCACAGTCTTTAACTGATGCAATTATTCCAGCTGCTCAAAGAAAAGTGGCTTTAACTCGATTGATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA