1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcgtccaaccacgaaatgaaacagtcacattgtgtcctatcccatgtgcaagcacttaagctaatgtactcagcttcctactgtttgcatgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATGGAGTTACTCGGTGGCTAGATTAGGCCGCTGGGGACAGAAAAATGGACT
species | Oryza sativa |
transcript | LOC_Os03g03460.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATEST: gi|88473977|gb|CI411248.1|CI411248
genomic: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
EST: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATEST: gi|86493313|gb|CI135946.1|CI135946
genomic: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
EST: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATEST: gi|88555528|gb|CI485793.1|CI485793
genomic: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
EST: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTCCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATEST: gi|33804331|gb|CF328040.1|CF328040
genomic: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
EST: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGGAGAAGATEST: gi|87031789|gb|CI272490.1|CI272490
genomic: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
EST: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATEST: gi|88417707|gb|CI535866.1|CI535866
genomic: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
EST: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATEST: gi|88355591|gb|CI679313.1|CI679313
genomic: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
EST: GGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATEST: gi|88227952|gb|CI227432.1|CI227432
genomic: GGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
EST: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATEST: gi|29661381|gb|CB657656.1|CB657656
genomic: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
EST: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATEST: gi|66923628|gb|CX110476.1|CX110476
genomic: AGGGGTCCTTGTTGGAGGGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
EST: GGTTGCAAACTTATCAATTGCAGAAATTCATCG GCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
genomic: GGTTGCAAACTTATCAATTGCAGAAATTCATCGgtatgaactt ... tgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGAT
tgtgcaagcacttaagctaatgtactcagcttcctactgtttgcatgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATGGAGTTACTCGGTGGCTAGATTAGGCCGCTGGGGACAGAAAAATGGACT
agctaat putative branch site (score: 27)
taatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcgtccaaccacgaaatgaaacagtcacattgtgtcctatcccatgtgcaagcacttaagctaatgtactcagcttcctactgtttgcatgttctgtagGCTGTATTGGACGTCTGTATCGAGATCCTTGCAGCTGCGAGTGAAGAAGATGGAGTTACTCGGTGGCTAGATTAGGCCGCTGGGGACAGAAAAATGGACT
tgcgtcc
- - - - - cacgaaa
- - - - - - - - - gaaacag
- - - - - - - - - - - - - - - -tgtgtcc
- - - - - - - - - - - - - - - - - - - - tcccatg
- - - - - - - - - - - - - - - - - - - - - - - -tgcaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttgca