1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttctcaaatatcatctatctcaaccaatttacagaaggaaaaaaaaacacttcttaactctgtctgattagctgcattcatgtgcagAGCCCACTTGATGTTGATAAACTTAGGGACATTGGTGTAAAAACAGTATTCTGCCTGCAGCAAGATCCAGACCTTGA
species | Oryza sativa |
transcript | LOC_Os03g01750.6 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAG AGCCCACTTGATGTTGATAAACTTAGGGACATTGGTGTAAAAACAGTATTCEST: gi|29680013|gb|CB676288.1|CB676288
genomic: TGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAGgttctcaaat ... tcatgtgcagAGCCCACTTGATGTTGATAAACTTAGGGACATTGGTGTAAAAACAGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAG AGCCCACTTGATGTTGATAAACTTAGGGACATTGGTGTAAAAACAGTATTCEST: gi|29641485|gb|CB646492.1|CB646492
genomic: TGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAGgttctcaaat ... tcatgtgcagAGCCCACTTGATGTTGATAAACTTAGGGACATTGGTGTAAAAACAGTATTC
EST: TGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAG AGCCCACTTGATGTTGATAAACTTAGGGACATTGGTGTAAAAACAGTATTC
genomic: TGAACTACAATTTCATACGCCCAGACTTGATCGTGGGCTCCTGCTTACAGgttctcaaat ... tcatgtgcagAGCCCACTTGATGTTGATAAACTTAGGGACATTGGTGTAAAAACAGTATTC
agaaggaaaaaaaaacacttcttaactctgtctgattagctgcattcatgtgcagAGCCCACTTGATGTTGATAAACTTAGGGACATTGGTGTAAAAACAGTATTCTGCCTGCAGCAAGATCCAGACCTTGA
aaaaaaaaacactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctcaaatatcatctatctcaaccaatttacagaaggaaaaaaaaacacttcttaactctgtctgattagctgcattcatgtgcagAGCCCACTTGATGTTGATAAACTTAGGGACATTGGTGTAAAAACAGTATTCTGCCTGCAGCAAGATCCAGACCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA