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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaaagcttagtttgcttgtatttttgttgcttcccagcattgttacacaagtcattaaaattattttgctaatcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA

Basic information

species Oryza sativa
transcript LOC_Os02g58730.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58730.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G375002_T02 (Zea mays), 3'ss of exon 4
gtattcaaagcttagtttgcttgtatttttgttgcttcccagcattgttacacaagtcattaaaattattttgctaatcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA
               | |||||  | || |   | ||     ||| ||  || |     | |   |  |||  || |||  || ||||||||||||||||||| || |||||||| || || ||||| ||||||||||||||||| ||||| 
-------gtatgctatctgctttgacttgt-cggtttgtgttcatagtggcatataaggtgagcgtcgtttcactgatctgtgcagGGCGAAGAGCTGAGGAAGCTAATTGGTGCTGCCGCCTACATCGAATGCAGTTCAAAAACCCAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218483315|gb|FG958115.1|FG958115
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCAATGCTCAA                         GGCGAATAGCTGAGGAAACTCATTGGTG
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTG
EST: gi|30228239|gb|CB966130.1|CB966130
EST:     AGCNATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|11233552|gb|AU164964.1|AU164964
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|58593555|gb|CF991863.1|CF991863
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|163920266|gb|EG714451.1|EG714451
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|88269641|gb|CI380939.1|CI380939
EST:     TTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: TTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|163918056|gb|EG713984.1|EG713984
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|88279468|gb|CI400468.1|CI400468
EST:     TACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: TACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|88832933|gb|CI369823.1|CI369823
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|86861523|gb|CI328204.1|CI328204
EST:     GCAATTTTTCGTAGATCACCCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: GCAATTTTTCGTAGATCA-CCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|25807453|gb|CA763414.1|CA763414
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|30229558|gb|CB967449.1|CB967449
EST:     AGCNATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCC-CTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|11233553|gb|AU164965.1|AU164965
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|117226289|gb|CT846197.1|CT846197
EST:     AGCAATTTTTTGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|32947879|gb|BP184451.1|BP184451
EST:     GCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAG
genomic: GCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCT-CAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAG
EST: gi|86869483|gb|CI346343.1|CI346343
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|33802327|gb|CF327037.1|CF327037
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAN                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|86415824|gb|CI029835.1|CI029835
EST:     AGCNATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|218494722|gb|FG969779.1|FG969779
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAG
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAG
EST: gi|163929342|gb|EG713767.1|EG713767
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|88834954|gb|CI370257.1|CI370257
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATT-GTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|7134822|gb|AU082691.1|AU082691
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|25802725|gb|CA758686.1|CA758686
EST:     AGCAATTTTT-GTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAAAGCTGAAGAAACTCATTNGGTGCACCGGCATACATGGAATGCAG
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATT-GGTGCAGCGGCATACATTGAATGCAG
EST: gi|86599058|gb|CI355675.1|CI355675
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|3763167|gb|AU029919.1|AU029919
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACA
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACA
EST: gi|2431385|gb|C73805.1|C73805
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|88375099|gb|CI523364.1|CI523364
EST:     TTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: TTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|14980894|gb|BI305572.1|BI305572
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|88251317|gb|CI349745.1|CI349745
EST:     AGCAATTTTTCGTAGATCACACTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|58594206|gb|CF992514.1|CF992514
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|33802329|gb|CF327038.1|CF327038
EST:     GCAATTTTTCGTAGATCACCCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: GCAATTTTTCGTAGATCA-CCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|88260942|gb|CI364518.1|CI364518
EST:     AGCAATTTTTCGTAGATCACCCTGCTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|7134824|gb|AU082692.1|AU082692
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT
EST: gi|86598350|gb|CI354967.1|CI354967
EST:     AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAG                         GGCGAAGAGCTGAGGAAACTCATT-GTGCAGCGGCATACATTGAATGCAGT
genomic: AGCAATTTTTCGTAGATCACCCTGGTGCTGTACCTATTTCCACTGCTCAGgtattcaaag ... atcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttcccagcattgttacacaagtcattaaaattattttgctaatcaatgtagGGCGAAGAGCTGAGGAAACTCATTGGTGCAGCGGCATACATTGAATGCAGTTCAAAAACACAGCAA
                                        tgctaat  putative branch site (score: 2)
                           attaaaattattttgc  TA-rich tract