1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttgaacatttcataactcatatcctgattattccagtagaatatgcccttgccagagtacgcactttattatatgttctgattggtggaactctttccagGGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCTGGTGGATGGCGCATGAGAATTGCTCTAGCACGTGCTCTCTTCATTGAGC
species | Oryza sativa |
transcript | LOC_Os02g58020.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCG GGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCTEST: gi|29662747|gb|CB659022.1|CB659022
genomic: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCGgtctgtttct ... ctctttccagGGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCT
EST: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCG GGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCTEST: gi|29644366|gb|CB649373.1|CB649373
genomic: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCGgtctgtttct ... ctctttccagGGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCT
EST: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCG GGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCTEST: gi|24468674|gb|CA305623.1|CA305623
genomic: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCGgtctgtttct ... ctctttccagGGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCT
EST: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCGTCAATTCTGGCG GGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCTEST: gi|88311922|gb|CI577528.1|CI577528
genomic: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCGgtctgtttct ... ctctttccagGGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCT
EST: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCG GGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCTEST: gi|58602069|gb|CK012597.1|CK012597
genomic: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCGgtctgtttct ... ctctttccagGGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCT
EST: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCG GGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCT
genomic: AGTTTATTGATGCTGATGCTGCAGAGGCTCGTGCAGCATCAATTCTGGCGgtctgtttct ... ctctttccagGGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCT
cccttgccagagtacgcactttattatatgttctgattggtggaactctttccagGGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCTGGTGGATGGCGCATGAGAATTGCTCTAGCACGTGCTCTCTTCATTGAGC
ttctgat putative branch site (score: 31)
ctctttcc putative PPT
actttattatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaacatttcataactcatatcctgattattccagtagaatatgcccttgccagagtacgcactttattatatgttctgattggtggaactctttccagGGTCTTAGTTTCACTCCTGAAATGCAACGTAAACGCACAAAACAGTTTTCTGGTGGATGGCGCATGAGAATTGCTCTAGCACGTGCTCTCTTCATTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
ttgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg