Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttggtcaacaaatttgaaaattttcacttttcagtacactaaactgttgcaatgtaaactctccagctataataaacagcttttatgtgtaatgtagGTGGCAGATCAACTTTGTCTGTTAGCAGGGTGAGCTCTGCATCGGCGTCAATGCTCTCAACAGTGGCAACTTGCACAACATCAGTAAAGACATTTTCACT

Basic information

species Oryza sativa
transcript LOC_Os02g57080.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57080.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G102163_T01 (Zea mays), 3'ss of exon 5
tttttggtcaacaaatttgaaaattttcacttttc-agtacactaaac----tgttgcaatgtaaactctc-cagctataataaacagcttttatgtgtaatgtagGTGGCAGATCAACTTTGTCTGTTAGCAGGGTGAGCTCTGCATCGGCGTCAATGCTCTCAACAGTGGCAACTTGCACAACATCAGTAAAGACATTTTCACT
        | | |  |   | || |   ||||||  |||||||||||     || | |     ||| | |  | | |||| | |  |   || |||  | ||  |||||  ||||||||||||||     ||| |||||||||||| || || |||  | | ||||||||||| |||||||||||||| |||||||||||||||||
----acccctaaaggtcacacaagtacaactttttgagtacactaaataatttgctacttctaaaattgttgcggttatactgataa--cttaatgcatgatccagGTGCTAGATCAACTTTGTCAACCGGCATGGTGAGCTCTGCGTCAGCATCAGCGTTTTCAACAGTGGCTACTTGCACAACATCTGTAAAGACATTTTCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88692794|gb|CI736369.1|CI736369
EST:     TCAGGAGGCTGTGAGCCCTGCAACTACCCCAGCAGTTAATAGAAGATATG                         GTGGCAGATCAACTTTGTCTGTTAGCAGGGTGAGCTCTGCATCGGCGTCAA
genomic: TCAGGAGGCTGTGAGCCCTGCAACTACCCCAGCAGTTAATAGAAGATATGgtatgacaat ... tgtaatgtagGTGGCAGATCAACTTTGTCTGTTAGCAGGGTGAGCTCTGCATCGGCGTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgttgcaatgtaaactctccagctataataaacagcttttatgtgtaatgtagGTGGCAGATCAACTTTGTCTGTTAGCAGGGTGAGCTCTGCATCGGCGTCAATGCTCTCAACAGTGGCAACTTGCACAACATCAGTAAAGACATTTTCACT
                         tataataaaca  TA-rich tract