1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacagtttttgttctttctatctcttctgtctgttatgcttctcattgcataacatggaaggtttcggcactgcagAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAG
species | Oryza sativa |
transcript | LOC_Os02g56550.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTGACTAGAATGGATCTCCCTTGACTTCTTTAAGGAAGAGTGTGAACAG AGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCAEST: gi|27548820|gb|CA766802.2|CA766802
genomic: TGTGACTAGAATGGATCTCC-TTGACTTCTTTAAGGAAGAGTGTGAACAGgtacagtttt ... ggcactgcagAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCA
EST: TTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAG AGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCAEST: gi|33690073|gb|CF318312.1|CF318312
genomic: TTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAGgtacagtttt ... ggcactgcagAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCA
EST: TTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAG AGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCAEST: gi|23513576|gb|BU673203.1|BU673203
genomic: TTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAGgtacagtttt ... ggcactgcagAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCA
EST: TTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAG AGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCA
genomic: TTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAGgtacagtttt ... ggcactgcagAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCA
ctcttctgtctgttatgcttctcattgcataacatggaaggtttcggcactgcagAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAG
gcataac putative branch site (score: 16)
ataacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagtttttgttctttctatctcttctgtctgttatgcttctcattgcataacatggaaggtttcggcactgcagAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG