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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcatattttgttaattttacaattctcgtcttgtatggctttataaatcatatattctttatcattcttatgcatgcctgcttttcaccttttttccagAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTG

Basic information

species Oryza sativa
transcript LOC_Os02g54770.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117221467|gb|CT859027.1|CT859027
EST:     AGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGG                         AAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGT
genomic: AGCTACAGCAGGTCACCACGTGGCCGAGGTGGTTCTCCTTATGCTGATGGgtaaggcata ... ttttttccagAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatcatatattctttatcattcttatgcatgcctgcttttcaccttttttccagAAGAGATGGTGGCAGGTACCGCCGTAGCAGGAGCTAGACCCTGATGCCTGTGCTTGACCGTCTGCTCTTTGGCTTGCATGCCATGAATGCTTTAAGACTG
                              tgcctgcttttcacct  CT-rich tract
     atatattctttatcat  TA-rich tract