1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cctgtgcaaccctgccctgttataatcattgactataaaattttcccaagcccctgtttgctgtttgcctgacaccagatgctatttctgagttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGGCATGTCCCAGGAAGAAGCTGAG
species | Oryza sativa |
transcript | LOC_Os02g53060.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|2797950|gb|AA751244.1|AA751244
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTT-CAAT-GGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|8527814|gb|AU092629.1|AU092629
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|58588610|gb|CF986918.1|CF986918
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGAEST: gi|88961062|gb|CI096465.1|CI096465
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGA
EST: GGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTNACCTCTATGGATTGCTNGACCACGAATGGAAGGAGGEST: gi|218488196|gb|FG970072.1|FG970072
genomic: GGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|58692319|gb|CK081006.1|CK081006
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|25799545|gb|CA755506.1|CA755506
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|87028372|gb|CI263714.1|CI263714
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|218498714|gb|FG963991.1|FG963991
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|88974504|gb|CI022045.1|CI022045
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCTCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|218498950|gb|FG948071.1|FG948071
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|38472737|gb|CF956869.1|CF956869
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAACGAGGEST: gi|88965355|gb|CI011606.1|CI011606
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|88829940|gb|CI004978.1|CI004978
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|88242742|gb|CI242591.1|CI242591
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|218504275|gb|FG947024.1|FG947024
genomic: CCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|86491932|gb|CI134565.1|CI134565
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTGACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|86595130|gb|CI260369.1|CI260369
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGEST: gi|88261592|gb|CI365168.1|CI365168
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
EST: CTCAGTCCCCCTTGGTGG-ACAATTCTGAGGCAACCATTTGCAATCGGAG GTTCAGGCTGTAATTACCTCTATGGATTGCTTGACCACGAATGTAAGGAGG
genomic: CTCAGTCCCCCTTGGTGGAACAATTCTGAGGCAACCATTTGCAATCGGAGgtatatatat ... agttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGG
ccaagcccctgtttgctgtttgcctgacaccagatgctatttctgagttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGGCATGTCCCAGGAAGAAGCTGAG
gcctgac putative branch site (score: 35)
tatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtgcaaccctgccctgttataatcattgactataaaattttcccaagcccctgtttgctgtttgcctgacaccagatgctatttctgagttttgcagGTTCAGGCTCTAGTTACCTCTATGGATTGCTTGACCACGAATGGAAGGAGGGCATGTCCCAGGAAGAAGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
cctgtgc
- - - - - cctgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagatgc