1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagtcttttgtacttctgtaccataaaaatgcatgcttgtataattgattttcctgaaggtttactttttctttgattatatggaattaagtctttttaatgtaataagttgtggttacatgttctgccttctgtactttcagATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAACTACGCACTGCTCAAAAGAAAGCGCAAGACATGCGTAGTGCAGTTTCTG
species | Oryza sativa |
transcript | LOC_Os02g52810.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGAAAATCTGCAGAAAGCAAAAGCAGAGGCGGCAATTCGAAAGTTAGAG ATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAAEST: gi|163929105|gb|EG713026.1|EG713026
genomic: GGGAAAATCTGCAGAAAGCAAAAGCAGAGGCAGCAATTCGAAAGTTAGAGgtagtctttt ... gtactttcagATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAA
EST: GGGAAAATCTGCAGAAAGCAAAAGCAGAGGCAGCAATTCGAAAGTTAGAG ATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAAEST: gi|29674430|gb|CB670705.1|CB670705
genomic: GGGAAAATCTGCAGAAAGCAAAAGCAGAGGCAGCAATTCGAAAGTTAGAGgtagtctttt ... gtactttcagATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAA
EST: GAAAGCAAAAGCAGAGGCAGCAATTCGAAAGTTAGAG ATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAAEST: gi|163923299|gb|EG709354.1|EG709354
genomic: GAAAGCAAAAGCAGAGGCAGCAATTCGAAAGTTAGAGgtagtctttt ... gtactttcagATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAA
EST: GGGAAAATCTGCAGAAAGCAAAAGCAGAGGCAGCAATTCGAAAGTTAGAG ATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAA
genomic: GGGAAAATCTGCAGAAAGCAAAAGCAGAGGCAGCAATTCGAAAGTTAGAGgtagtctttt ... gtactttcagATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAA
aagtctttttaatgtaataagttgtggttacatgttctgccttctgtactttcagATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAACTACGCACTGCTCAAAAGAAAGCGCAAGACATGCGTAGTGCAGTTTCTG
ttttaat putative branch site (score: 3)
ccttctgtactttc putative PPT
tttttaatgtaataag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtcttttgtacttctgtaccataaaaatgcatgcttgtataattgattttcctgaaggtttactttttctttgattatatggaattaagtctttttaatgtaataagttgtggttacatgttctgccttctgtactttcagATGAAGCTTGAAAAGAAGAGGTCATCATCGATGGATAGAATCTTGGGCAAACTACGCACTGCTCAAAAGAAAGCGCAAGACATGCGTAGTGCAGTTTCTG
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