1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttggcagatttcaaagtaatccaggcccagtgcactgaaaattggtatagaaagtcttgtgttatttgcaaagaacaaaaggcctcatgctgtcttacagAAAATCAGAATCGCTCCAGATAGTGGGGTATTCAGATTCTGACTTTGCAAAAGATAATACAAAGTTAACATCGGGATACGTGTTAACCCTGGCAGTAGGA
species | Oryza sativa |
transcript | LOC_Os02g51960.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
tatagaaagtcttgtgttatttgcaaagaacaaaaggcctcatgctgtcttacagAAAATCAGAATCGCTCCAGATAGTGGGGTATTCAGATTCTGACTTTGCAAAAGATAATACAAAGTTAACATCGGGATACGTGTTAACCCTGGCAGTAGGA
ctgtctt CT-rich tract
tgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggcagatttcaaagtaatccaggcccagtgcactgaaaattggtatagaaagtcttgtgttatttgcaaagaacaaaaggcctcatgctgtcttacagAAAATCAGAATCGCTCCAGATAGTGGGGTATTCAGATTCTGACTTTGCAAAAGATAATACAAAGTTAACATCGGGATACGTGTTAACCCTGGCAGTAGGA
- - - - - -caaagtaa
- - - - - - - - - - -caggccc
- - - - - - - - - - - - - - - tgcactg
- - - - - - - - - - - - - - - - - - - - - - - atagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcatgc