1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gattgggttaattaggagtggaatgtctgcatatctcatcgtccattttatggctattaattattttactaaaattttggtatgactgttatactttcagCAGCCCAAACCTGTGCAGCCAGAATGTAGCAATGTCGCATCTGTTGATTCTGGGATGTCAAACCCAGCTGCAAGGGCTGATTCCAGCCATTGTATTCCTG
species | Oryza sativa |
transcript | LOC_Os02g49230.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGACAGTTATTTTGAAATGAAGGATGTGCCAGCAGATGAATCTAATGAG C--CC-AAACCTGTGCAGCCAGAATGTAGCAATGTCGCATCTGTTGATTCT
genomic: TTGACAGTTATTTTGAAATGAAGGATGTGCCAGCAGATGAATCTAATGAGgtccgtacct ... atactttcagCAGCCCAAACCTGTGCAGCCAGAATGTAGCAATGTCGCATCTGTTGATTCT
ttttatggctattaattattttactaaaattttggtatgactgttatactttcagCAGCCCAAACCTGTGCAGCCAGAATGTAGCAATGTCGCATCTGTTGATTCTGGGATGTCAAACCCAGCTGCAAGGGCTGATTCCAGCCATTGTATTCCTG
tactaaa putative branch site (score: 1)
tactttc putative PPT
tattaattattttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgggttaattaggagtggaatgtctgcatatctcatcgtccattttatggctattaattattttactaaaattttggtatgactgttatactttcagCAGCCCAAACCTGTGCAGCCAGAATGTAGCAATGTCGCATCTGTTGATTCTGGGATGTCAAACCCAGCTGCAAGGGCTGATTCCAGCCATTGTATTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - -tgtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgactg