1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatggtaccttctttttctttgttccatcaatttttatttactctgcttctaagttttatgtattagtattgatgtttcatgtttttcttattacagAAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACCTTGTCAGTCAAGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGC
species | Oryza sativa |
transcript | LOC_Os02g48964.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAG AAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACCEST: gi|218482945|gb|FG948107.1|FG948107
genomic: GTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAGgtatggtacc ... cttattacagAAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACC
EST: GTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAG AAGCACCCTGGAAGTTTACTTGAGGGCTTTTCTGGGACCCAAGTTAGTACCEST: gi|218501212|gb|FG955432.1|FG955432
genomic: GTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAGgtatggtacc ... cttattacagAAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACC
EST: TGAATGTCCAA-GACATGTGGCACCCA-GGAG AAGCACCCTGGAAG-TTACTTGAGGGCTTTTCTGGGACCCAAG-TAGTACCEST: gi|218504711|gb|FG953266.1|FG953266
genomic: TGAATGTCCAAGGACATGTGGCACCCAGGGAGgtatggtacc ... cttattacagAAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACC
EST: GTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAG AAGCACCCTGGAAGTTTACTTGAGGGCTTTTCTGGGACCCAAGTTAGTACCEST: gi|29619648|gb|CB624660.1|CB624660
genomic: GTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAGgtatggtacc ... cttattacagAAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACC
EST: GTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAG AAGCACCCTGGAAGTTTACTTGAGGGCTTTTCTGGGACCCAAGTTAGTACCEST: gi|29672638|gb|CB668913.1|CB668913
genomic: GTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAGgtatggtacc ... cttattacagAAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACC
EST: GTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAG AAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACC
genomic: GTCTTGATACCGAGCTTATGAATGTCCAAGGACATGTGGCACCCAGGGAGgtatggtacc ... cttattacagAAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACC
tctgcttctaagttttatgtattagtattgatgtttcatgtttttcttattacagAAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACCTTGTCAGTCAAGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGC
tattgat putative branch site (score: 31)
tttcatgtttttctt CT-rich tract
taagttttatgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtaccttctttttctttgttccatcaatttttatttactctgcttctaagttttatgtattagtattgatgtttcatgtttttcttattacagAAGCACCCTGGAAGTTTACTTGAGGGTTTTTCTGGGACCCAAGTTAGTACCTTGTCAGTCAAGGACAATTTGCTGGTAGCTGGTGGGTTTCAAGGAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA