1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtagtagatgctatatcacttaaaactgtctgaactctgaactagtatttgtgttatccagaatccccgagatatgatgtaaagatttctcatagtcatttaaatctgatcatggcatgttttctgcagTGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACACTTCAAAAGGTGTTACCTTTGTCAAAGGAACTGTGCTTACATCCTTTGA
species | Oryza sativa |
transcript | LOC_Os02g47800.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTTACTAATAGGATAAAAGTAACCATGGTCTTCCCTGAAAGCCACTGCA TGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACAEST: gi|29614323|gb|CB619336.1|CB619336
genomic: GGTTACTAATAGGATAAAAGTAACCATGGTCTTCCCTGAAAGCCACTGCAgtaagtagta ... ttttctgcagTGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACA
EST: GGTTACTAATAGGATAAAAGTAACCATGGTCTTCCCTGAAAGCCACTGCA TGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACAEST: gi|84117206|gb|CD150973.1|CD150973
genomic: GGTTACTAATAGGATAAAAGTAACCATGGTCTTCCCTGAAAGCCACTGCAgtaagtagta ... ttttctgcagTGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACA
EST: GGTTACTAATAGGATAAAAGTAACCATGGTCTTCCCTGAAAGCCACTGCA TGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACAEST: gi|66916761|gb|CX103609.1|CX103609
genomic: GGTTACTAATAGGATAAAAGTAACCATGGTCTTCCCTGAAAGCCACTGCAgtaagtagta ... ttttctgcagTGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACA
EST: GGTTACTAATAGGATAAAAGTAACCATGGTCTTCCCTGAAAGCCACTGCA TGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACAEST: gi|29638189|gb|CB643198.1|CB643198
genomic: GGTTACTAATAGGATAAAAGTAACCATGGTCTTCCCTGAAAGCCACTGCAgtaagtagta ... ttttctgcagTGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACA
EST: GGTTACTAATAGGATAAAAGTAACCATGGTCTTCCCTGAAAGCCACTGCA TGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACA
genomic: GGTTACTAATAGGATAAAAGTAACCATGGTCTTCCCTGAAAGCCACTGCAgtaagtagta ... ttttctgcagTGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACA
tgatgtaaagatttctcatagtcatttaaatctgatcatggcatgttttctgcagTGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACACTTCAAAAGGTGTTACCTTTGTCAAAGGAACTGTGCTTACATCCTTTGA
atctgat putative branch site (score: 37)
tgttttct putative PPT
atagtcatttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagtagatgctatatcacttaaaactgtctgaactctgaactagtatttgtgttatccagaatccccgagatatgatgtaaagatttctcatagtcatttaaatctgatcatggcatgttttctgcagTGGCCCGTCTATTTACACCAAAAATTGCAGAATATTATGAGAACTATTACACTTCAAAAGGTGTTACCTTTGTCAAAGGAACTGTGCTTACATCCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA