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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttacattgcactgtacatatcatgtgttgttcctgtgcttcctagttaacacgtacatcttttattacagagGAAATCGATACAAACATTGAGAATTCTGCAGCAGCAACCAAAGAGGCAAAGACAGAACTCGCGAAAGCGTCCAAGACTCAGAAATCGAATTCATCACTG

Basic information

species Oryza sativa
transcript LOC_Os02g47440.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58606351|gb|CK034384.1|CK034384
EST:     TTTAAGGATCTTGCTACACTTGTGCATATTCAAGGAGTTACAATC-G-AG                         GAAATCGATACAAACATTGAGAATTCTGCGGCAGCAACCAAAGAGGCAAAG
genomic: TTTAAGGATCTTGCTACACTTGTGCATATTCAAGGAGTTACAATCGGCAAgttttacatt ... tattacagagGAAATCGATACAAACATTGAGAATTCTGCAGCAGCAACCAAAGAGGCAAAG
EST: gi|86500468|gb|CI143101.1|CI143101
EST:     TTTAAGGATCTTGCTACACTTGTGCATATTCAAGGAGTTACAATC-G-AG                         GAAATCGATACAAACATTGAGAATTCTGCAGCAGCAACCAAAGAGGCAAAG
genomic: TTTAAGGATCTTGCTACACTTGTGCATATTCAAGGAGTTACAATCGGCAAgttttacatt ... tattacagagGAAATCGATACAAACATTGAGAATTCTGCAGCAGCAACCAAAGAGGCAAAG
EST: gi|58667527|gb|CK056213.1|CK056213
EST:     TTTAAGGATCTTGCTACACTTGTGCATATTCAAGGAGTTACAATC-G-AG                         GAAATCGATACAAACATTGAGAATTCTGCAGCAGCAACCAAAGAGGCAAAG
genomic: TTTAAGGATCTTGCTACACTTGTGCATATTCAAGGAGTTACAATCGGCAAgttttacatt ... tattacagagGAAATCGATACAAACATTGAGAATTCTGCAGCAGCAACCAAAGAGGCAAAG
EST: gi|29646264|gb|CB651271.1|CB651271
EST:     TTTAAGGATCTTGCTACACTTGTGCATATTCAAGGAGTTACAATCG--AG                         GAAATCGATACAAACATTGAGAATTCTGCAGCAGCAACCAAAGAGGCAAAG
genomic: TTTAAGGATCTTGCTACACTTGTGCATATTCAAGGAGTTACAATCGGCAAgttttacatt ... tattacagagGAAATCGATACAAACATTGAGAATTCTGCAGCAGCAACCAAAGAGGCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcatgtgttgttcctgtgcttcctagttaacacgtacatcttttattacagagGAAATCGATACAAACATTGAGAATTCTGCAGCAGCAACCAAAGAGGCAAAGACAGAACTCGCGAAAGCGTCCAAGACTCAGAAATCGAATTCATCACTG
                          agttaac  putative branch site (score: 3)
                                        tcttttatt  putative PPT
                                    tacatcttttatta  TA-rich tract