1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgatcttgccatcttcctttcctccacttatgattatcggcaaacagatgttggacaaaactgaactaatttgtgttggcttcgtcttaatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATACAAGAAAGGGCTCATCAAATTCACCATCATCACCTGTCGCAAGCCCGA
species | Oryza sativa |
transcript | LOC_Os02g47310.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|117221355|gb|CT858945.1|CT858945
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|86502638|gb|CI145271.1|CI145271
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|86874770|gb|CI325281.1|CI325281
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|88217321|gb|CI217170.1|CI217170
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|88552920|gb|CI482974.1|CI482974
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGGTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|88982830|gb|CI028243.1|CI028243
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCCATGGTGATGCCTCTGATGATCGAAGGATEST: gi|86848935|gb|CI295738.1|CI295738
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|38477974|gb|CF962107.1|CF962107
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGACGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|88257977|gb|CI360563.1|CI360563
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACAT-GAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|88264967|gb|CI368741.1|CI368741
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|88965269|gb|CI009305.1|CI009305
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|86480720|gb|CI123353.1|CI123353
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|29675076|gb|CB671351.1|CB671351
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTTTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|29643991|gb|CB648998.1|CB648998
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACAGGGAAAGGTTTAACTTCTCTGGTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|86594355|gb|CI251227.1|CI251227
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATEST: gi|38469736|gb|CF953867.1|CF953867
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
EST: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTG GGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
genomic: TATAAAATCAGCATTGACATGGAAAGGTTTAACTTCTCTGCTAAGAAGTGgtatgatctt ... taatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGAT
aacagatgttggacaaaactgaactaatttgtgttggcttcgtcttaatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATACAAGAAAGGGCTCATCAAATTCACCATCATCACCTGTCGCAAGCCCGA
cttcgtctt CT-rich tract
ttaatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatcttgccatcttcctttcctccacttatgattatcggcaaacagatgttggacaaaactgaactaatttgtgttggcttcgtcttaatttgaagGGTGGAAGACGATAAGAGGTGCAATGGTGATGCCTCTGATGATCGAAGGATACAAGAAAGGGCTCATCAAATTCACCATCATCACCTGTCGCAAGCCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA