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gtatgtatctgaagataaatccataggaggaaatatgcatttcatacttttgcaaaatattcccagtgaaataaataactgattgtaagcaaaatgtgcactgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG
species | Oryza sativa |
transcript | LOC_Os02g47220.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTT GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGEST: gi|58662505|gb|CK051191.1|CK051191
genomic: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatct ... tgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATG
EST: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTT GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGEST: gi|29625051|gb|CB630062.1|CB630062
genomic: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatct ... tgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATG
EST: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTT GTGGCAGTTAAGEST: gi|2317408|gb|C22462.1|C22462
genomic: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatct ... tgatctatagGTGGCAGTTAAG
EST: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTT GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGEST: gi|218482677|gb|FG959726.1|FG959726
genomic: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatct ... tgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATG
EST: GGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTT GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTATGAGGAATGCATGEST: gi|88839102|gb|CI378026.1|CI378026
genomic: GGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatct ... tgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATG
EST: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTT GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGEST: gi|58664681|gb|CK053367.1|CK053367
genomic: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatct ... tgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATG
EST: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTT GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGEST: gi|58670491|gb|CK059177.1|CK059177
genomic: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatct ... tgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATG
EST: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTT GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGEST: gi|58665074|gb|CK053760.1|CK053760
genomic: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatct ... tgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATG
EST: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTT GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATG
genomic: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatct ... tgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATG
atattcccagtgaaataaataactgattgtaagcaaaatgtgcactgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG
aaataaataactgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatctgaagataaatccataggaggaaatatgcatttcatacttttgcaaaatattcccagtgaaataaataactgattgtaagcaaaatgtgcactgatctatagGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA