1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atggcatgtttgccctctagtatttactactactagtaattagaacgatctatgccgaattgctgatcctgtctaatgcagcattcctttgttttgtcagAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTG
species | Oryza sativa |
transcript | LOC_Os02g47110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGATGCTTAACAGTGTAATATTGGTATTTGCCCAATAAACAAGATATG AAAGGGNCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATEST: gi|8527517|gb|AU092332.1|AU092332
genomic: TTTGATGCTTAACAGTGTAATATTGGTATTTG-CCAATAAACAAGATATGgtaagtcaac ... gttttgtcagAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGAT
EST: CTTTGATGCTTNACAGTGTAATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATEST: gi|66919065|gb|CX105913.1|CX105913
genomic: CTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGgtaagtcaac ... gttttgtcagAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGAT
EST: CTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCGATGACGCCGTTGGAAGTGTGCGAEST: gi|33692402|gb|CF320641.1|CF320641
genomic: CTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGgtaagtcaac ... gttttgtcagAAAGGGGCAATGACGCCGTTGGAGGTGTGCGA
EST: CTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATG AAAGGGGCAATGACGCCGTTG
genomic: CTTTGATGCTTAACAGTGTAATATTGGTATTTGCCAATAAACAAGATATGgtaagtcaac ... gttttgtcagAAAGGGGCAATGACGCCGTTG
cgatctatgccgaattgctgatcctgtctaatgcagcattcctttgttttgtcagAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTG
gtctaat putative branch site (score: 3)
ttcctttgttttgtc putative PPT
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggcatgtttgccctctagtatttactactactagtaattagaacgatctatgccgaattgctgatcctgtctaatgcagcattcctttgttttgtcagAAAGGGGCAATGACGCCGTTGGAGGTGTGCGAAGGCCTTGGCCTCTATGATTTAAAGAATCGCATCTGGCATATCCAAGGCTCTTGTGCCCTCAAAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA