1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atctgccttgcacaaaatttggaaacacgcatgccctttacttctgtcaaatttcttcatttcaatttccaatgctctgatggctttgttttatctgtagGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATC
species | Oryza sativa |
transcript | LOC_Os02g45480.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCAT GGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTAEST: gi|218479278|gb|FG957154.1|FG957154
genomic: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCATgtatgtgact ... ttatctgtagGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTA
EST: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCAT GGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTAEST: gi|29618177|gb|CB623189.1|CB623189
genomic: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCATgtatgtgact ... ttatctgtagGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTA
EST: TTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCAT GGAGCACTTGCCCTAAGTGGCATGCGTGATGCACAATCAAAACCTGTGCTAEST: gi|86501745|gb|CI144378.1|CI144378
genomic: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCATgtatgtgact ... ttatctgtagGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTA
EST: GGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCAT GGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTAEST: gi|29657539|gb|CB653814.1|CB653814
genomic: GGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCATgtatgtgact ... ttatctgtagGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTA
EST: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCAT GGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTAEST: gi|33794977|gb|CF323368.1|CF323368
genomic: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCATgtatgtgact ... ttatctgtagGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTA
EST: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCAT GGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTAEST: gi|58674413|gb|CK063099.1|CK063099
genomic: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCATgtatgtgact ... ttatctgtagGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTA
EST: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCAT GGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTA
genomic: CTACAGAAAGTGGAAGCTTGGAAGTAACATATACACACAAAGAGGAGCATgtatgtgact ... ttatctgtagGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTA
gtcaaatttcttcatttcaatttccaatgctctgatggctttgttttatctgtagGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATC
ctctgat putative branch site (score: 4)
ctttgtttt putative PPT
atttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgccttgcacaaaatttggaaacacgcatgccctttacttctgtcaaatttcttcatttcaatttccaatgctctgatggctttgttttatctgtagGGAGCACTTGCCCTAAGTGGCATGCCTGATGCACAATCAAAACCTGTGCTACTATGTTCACTAAATGACAACACTGTCCGACTATATGACCTGCCATC
- - -ccttgca
- - - - - - - - - - - - - -cgcatgc
- - - - - - - - - - - - - - - - - - - -acttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgg