1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacactcgcttctttgattcatggttctatactcgccgcaaaagcattgtgttttttcttataaaaaaattctaactatagtttataatgtttttcttccctactgtaataataaacatgctcatttcaaggctatactcctacattctttaaatttgttttgctgtgcagATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGG
species | Oryza sativa |
transcript | LOC_Os02g45110.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAG ATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGEST: gi|29668321|gb|CB664596.1|CB664596
genomic: CTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAGgtacactcgc ... tgctgtgcagATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTG
EST: CTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAG ATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGEST: gi|87039297|gb|CI193919.1|CI193919
genomic: CTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAGgtacactcgc ... tgctgtgcagATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTG
EST: CTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAG ATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGEST: gi|86499970|gb|CI142603.1|CI142603
genomic: CTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAGgtacactcgc ... tgctgtgcagATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTG
EST: CTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAG ATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTG
genomic: CTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAGgtacactcgc ... tgctgtgcagATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTG
catgctcatttcaaggctatactcctacattctttaaatttgttttgctgtgcagATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGG
tttgtttt CT-rich tract
tacattctttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactcgcttctttgattcatggttctatactcgccgcaaaagcattgtgttttttcttataaaaaaattctaactatagtttataatgtttttcttccctactgtaataataaacatgctcatttcaaggctatactcctacattctttaaatttgttttgctgtgcagATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG