1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caacatgctgattgttaagtatttcagttgctcttttgtcattttttcatgctggatgtcttgttaataacgtgtcccctttttatttgttttcatacagAGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAAATCTTTTGCTTCTGGGATCAGAAATTTTTGGAGAAAACTGTGAATTTCT
species | Oryza sativa |
transcript | LOC_Os02g42550.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGATCCAATTGAAGGTGATAAGACGGTCCAAGGCAAATGTACTGGACAG AGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAAEST: gi|88522993|gb|CI450792.1|CI450792
genomic: CAGATCCAATTGAAGGTGATAAGACGGT-CAAGGCAAATGTACTGGACAGgtattgctta ... tttcatacagAGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAA
EST: TCAGATCCAATTGAAGGTGATAAGACGGTCAAGGCAAATGTACTGGACAG AGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAAEST: gi|89177856|gb|CI391035.1|CI391035
genomic: TCAGATCCAATTGAAGGTGATAAGACGGTCAAGGCAAATGTACTGGACAGgtattgctta ... tttcatacagAGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAA
EST: TCAGATCCAATTGAAGGTGATAAGACGGTCAAGGCAAATGTACTGGACAG AGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAAEST: gi|88463287|gb|CI524597.1|CI524597
genomic: TCAGATCCAATTGAAGGTGATAAGACGGTCAAGGCAAATGTACTGGACAGgtattgctta ... tttcatacagAGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAA
EST: TCAGATCCAATTGAAGGTGATAAGACGGTCAAGGCAAATGTACTGGACAG AGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAAEST: gi|86429265|gb|CI075946.1|CI075946
genomic: TCAGATCCAATTGAAGGTGATAAGACGGTCAAGGCAAATGTACTGGACAGgtattgctta ... tttcatacagAGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAA
EST: TCAGATCCAATTGAAGGTGATAAGACGGTTAAGGCAAATGTACTGGACAG AGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAA
genomic: TCAGATCCAATTGAAGGTGATAAGACGGTCAAGGCAAATGTACTGGACAGgtattgctta ... tttcatacagAGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAA
ttcatgctggatgtcttgttaataacgtgtcccctttttatttgttttcatacagAGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAAATCTTTTGCTTCTGGGATCAGAAATTTTTGGAGAAAACTGTGAATTTCT
taataac putative branch site (score: 2)
tgtcccctttttattt CT-rich tract
tttttatttgttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacatgctgattgttaagtatttcagttgctcttttgtcattttttcatgctggatgtcttgttaataacgtgtcccctttttatttgttttcatacagAGAAGAGAACCCGGAGGTTGAGCCGAAGACAGGTCTTTTTGGGAGCCTGAAATCTTTTGCTTCTGGGATCAGAAATTTTTGGAGAAAACTGTGAATTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - -tgctgat
- - - - - - - - - - - - -agttgct
- - - - - - - - - - - - - - - - cttttgt
- - - - - - - - - - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcttg