1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtattgtccctgtgatcaatgatcatgaaatatgtgtaccacaatggagtttgtgtagtgcgaggacttcatatttttatatgactaaatttattgccatcatattgctttatatacaatggtttgccaccggaagattacaggcatattagtgtttgtataacttttcataccctttcagGCAAAGCATCTACTTGAAGCTTTTAATAAGGACCGTGTCTCACTAATGACTTCACTCCAAACTGCTAATCAATCAATTCCACCACCACCTGTTGCTGCTG
species | Oryza sativa |
transcript | LOC_Os02g39300.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGCTACTGAAGAGGTTGACAAGCTCAAGGAACAGAGGGCTGAAGAGCAG GCAAAGCATCTACTTGAAGCTTTTAATAAGGACCGTGTCTCACTAATGACTEST: gi|2312419|gb|C28574.1|C28574
genomic: GGGCTACTGAAGAGGTTGACAAGCTCAAGGAACAGAGGGCTGAAGAGCAGgtattgtccc ... accctttcagGCAAAGCATCTACTTGAAGCTTTTAATAAGGACCGTGTCTCACTAATGACT
EST: GGGCTACTGAAGAGGTTGACAAGCTCAAGGAACAGAGGGCTGAAGAGCAG GCAAAG-ATCTACTTGAAGCTTTTAATAAGGACCGTGTCTCACTAATGACTEST: gi|29688020|gb|CB684295.1|CB684295
genomic: GGGCTACTGAAGAGGTTGACAAGCTCAAGGAACAGAGGGCTGAAGAGCAGgtattgtccc ... accctttcagGCAAAGCATCTACTTGAAGCTTTTAATAAGGACCGTGTCTCACTAATGACT
EST: GGGCTACTGAAGAGGTTGACAAGCTCAAGGAACAGAGGGCTGAAGAGCAG GCAAAGCATCTACTTGAAGCTTTTAATAAGGACCGTGTCTCACTAATGACT
genomic: GGGCTACTGAAGAGGTTGACAAGCTCAAGGAACAGAGGGCTGAAGAGCAGgtattgtccc ... accctttcagGCAAAGCATCTACTTGAAGCTTTTAATAAGGACCGTGTCTCACTAATGACT
ccaccggaagattacaggcatattagtgtttgtataacttttcataccctttcagGCAAAGCATCTACTTGAAGCTTTTAATAAGGACCGTGTCTCACTAATGACTTCACTCCAAACTGCTAATCAATCAATTCCACCACCACCTGTTGCTGCTG
gtataac putative branch site (score: 30)
cttttcataccctttc CT-rich tract
tttgtataactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtccctgtgatcaatgatcatgaaatatgtgtaccacaatggagtttgtgtagtgcgaggacttcatatttttatatgactaaatttattgccatcatattgctttatatacaatggtttgccaccggaagattacaggcatattagtgtttgtataacttttcataccctttcagGCAAAGCATCTACTTGAAGCTTTTAATAAGGACCGTGTCTCACTAATGACTTCACTCCAAACTGCTAATCAATCAATTCCACCACCACCTGTTGCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT