1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagctctgcccccttagaatcttgtttttgcacaggatgagcatgcaaaattgcatggtcttattttcagtcccatctgcattgggacaagacaaagtctgcttataacatgcattactccaaccaccattgtgagttgaaaattattttgagtttgctaccatctaaaactgttctgctttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTCTATCTTCTCATGATGCTAGGAACGCCAATATCTCAGCTTATGATGAAT
species | Oryza sativa |
transcript | LOC_Os02g37080.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGTGAGAC-AATCAAGAC-AGANATGTTGGAGATTGATGGTCGATCTG ACTCTGAAGGTGAAGACGANCATGAAGATTGATTGCTGAACCATCTGGTTTEST: gi|86490387|gb|CI133020.1|CI133020
genomic: CTTGTGAGACAAATCAAGACAAGAAATGTTGGAGA-TGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
EST: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTG ACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTEST: gi|89169521|gb|CI109880.1|CI109880
genomic: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
EST: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTG ACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTEST: gi|3759092|gb|C96791.1|C96791
genomic: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
EST: CAAATCAAGNCCAAGAAATGTTCGGAGATGATGTCCGATCTG ACTCTGACGGTGAAGCCGAGCATNGAAGATTGATTGCTGAACCATCTGGTTEST: gi|87034040|gb|CI187402.1|CI187402
genomic: CAAATCAAG-ACAAGAAATGTT-GGAGATGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCAT-GAAGATTGATTGCTGAACCATCTGGTT
EST: AAATGTTGGAGATGATGTTCGATCTG ACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTEST: gi|88983404|gb|CI028640.1|CI028640
genomic: AAATGTTGGAGATGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
EST: GCTTGTGAGACCAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTG ACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTEST: gi|163920925|gb|EG710099.1|EG710099
genomic: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
EST: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTG ACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTEST: gi|86505283|gb|CI147916.1|CI147916
genomic: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
EST: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTG ACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTEST: gi|86885873|gb|CI295896.1|CI295896
genomic: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
EST: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTG ACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTEST: gi|9865691|gb|AU101441.1|AU101441
genomic: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
EST: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTG ACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTEST: gi|25807119|gb|CA763080.1|CA763080
genomic: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
EST: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTG ACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
genomic: GCTTGTGAGACAAATCAAGACAAGAAATGTTGGAGATGATGTTCGATCTGgtaagctctg ... ttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTT
gttgaaaattattttgagtttgctaccatctaaaactgttctgctttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTCTATCTTCTCATGATGCTAGGAACGCCAATATCTCAGCTTATGATGAAT
atctaaa putative branch site (score: 25)
ttctgcttt putative PPT
aaattattttgagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctctgcccccttagaatcttgtttttgcacaggatgagcatgcaaaattgcatggtcttattttcagtcccatctgcattgggacaagacaaagtctgcttataacatgcattactccaaccaccattgtgagttgaaaattattttgagtttgctaccatctaaaactgttctgctttatgtgcagACTCTGAAGGTGAAGACGAGCATGAAGATTGATTGCTGAACCATCTGGTTTCTATCTTCTCATGATGCTAGGAACGCCAATATCTCAGCTTATGATGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT