1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acagtttgtgcttctgtagtaaaattaatatagtacagctcaattagggaaaaaaatattgtataacagaataatttgcgggccacttgtttctttgcagAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAG
species | Oryza sativa |
transcript | LOC_Os02g35590.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTG AGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAA
genomic: CAAGCATTGTATGCTCTGGAATTCAACCTCTTCACAATCTTACCGTACTGgtaagaactg ... ttctttgcagAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAA
agggaaaaaaatattgtataacagaataatttgcgggccacttgtttctttgcagAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAG
gtataac putative branch site (score: 78)
ccacttgtttcttt putative PPT
aaaaaatattgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagtttgtgcttctgtagtaaaattaatatagtacagctcaattagggaaaaaaatattgtataacagaataatttgcgggccacttgtttctttgcagAGGTTCATTGAGAAGAAGGTTGGTACAGGGGAGAGCATCCCATGGACTCAACAACAGATCGACAGAGGTTTCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - tgcttct
- - - - - - - - -agtaaaa
- - - - - - - - - - - - - - - - -tacagct
- - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgggc