1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gacaatactagaaagtcttataacctgaaacggaggaagtactaccttttgatttcataacctttcttgttattgttataaaataggtctatttgtgcagGATGATGCCCACATATTTTGTCTGGAGGACCAGATAAAAGATGAAATTAGAGGTGTTCTTGATCTGACTGAGCAAATACTGGGCCAATTTGGCTTTCGGT
species | Oryza sativa |
transcript | LOC_Os02g33500.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTATCTGGTAGTTTGCATGGGCTGTTCCGTGTCAGAGGATTTACGCAG GATGATGCCCACATATTTTGTCTGGAGGACCAGATAAAAGATGAAATTAGAEST: gi|58603960|gb|CK014488.1|CK014488
genomic: AGCTATCTGGTAGTTTGCATGGGCTGTTCCGTGTCAGAGGATTTACGCAGgtgcctctct ... atttgtgcagGATGATGCCCACATATTTTGTCTGGAGGACCAGATAAAAGATGAAATTAGA
EST: AGCTATCTGGTAGTTTGCATGGGCTGTTCCGTGTCAGAGGATTTACGCAG GATGATGCCCACATATTTTGTCTGGAGGACCAGATAAAAGATGAAATTAGAEST: gi|58606455|gb|CK034488.1|CK034488
genomic: AGCTATCTGGTAGTTTGCATGGGCTGTTCCGTGTCAGAGGATTTACGCAGgtgcctctct ... atttgtgcagGATGATGCCCACATATTTTGTCTGGAGGACCAGATAAAAGATGAAATTAGA
EST: GAGGATTTACGCAG GATGATGCCCACATATTTTGTCTGGAGGACCAGATAAAAGATGAGATTAGA
genomic: GAGGATTTACGCAGgtgcctctct ... atttgtgcagGATGATGCCCACATATTTTGTCTGGAGGACCAGATAAAAGATGAAATTAGA
cttttgatttcataacctttcttgttattgttataaaataggtctatttgtgcagGATGATGCCCACATATTTTGTCTGGAGGACCAGATAAAAGATGAAATTAGAGGTGTTCTTGATCTGACTGAGCAAATACTGGGCCAATTTGGCTTTCGGT
tcataac putative branch site (score: 16)
tctattt putative PPT
tttcttgttattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacaatactagaaagtcttataacctgaaacggaggaagtactaccttttgatttcataacctttcttgttattgttataaaataggtctatttgtgcagGATGATGCCCACATATTTTGTCTGGAGGACCAGATAAAAGATGAAATTAGAGGTGTTCTTGATCTGACTGAGCAAATACTGGGCCAATTTGGCTTTCGGT
- - - - - - - - - - - acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatagg