1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgcagattctttacaacatcatcacaagttcgctctaccattttgtaatgaccatgagatctttcagttcgtactaatatagttgaccatgcttccatctctttcagATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACAAAGCTCTCTGAGATGCTTATTACAGGAGATGCTGGACAGGGGTCAACTA
species | Oryza sativa |
transcript | LOC_Os02g33420.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGCAAGTGATGATGCCTTGGACGTCATCTTGTCTGAATCATACAACCCA ATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACAEST: gi|25806878|gb|CA762839.1|CA762839
genomic: TTGCAAGTGATGATGCCTTGGACGTCATCTTGTCTGAATCATACAACCCAgtaagtgcag ... tctctttcagATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACA
EST: TGCAAGTGATGATGCCTTGGACGGTCATCTCGTCTGAATCATCCAACCCA ATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACAEST: gi|88840132|gb|CI079586.1|CI079586
genomic: TGCAAGTGATGATGCCTTGGAC-GTCATCTTGTCTGAATCATACAACCCAgtaagtgcag ... tctctttcagATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACA
EST: GAATCATACAACCCA ATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACAEST: gi|86478793|gb|CI121426.1|CI121426
genomic: GAATCATACAACCCAgtaagtgcag ... tctctttcagATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACA
EST: TTGCAAGTGATGATGCCTTGGACGTCATCTTGTCTGAATCATACAACCCA ATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACA
genomic: TTGCAAGTGATGATGCCTTGGACGTCATCTTGTCTGAATCATACAACCCAgtaagtgcag ... tctctttcagATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACA
catgagatctttcagttcgtactaatatagttgaccatgcttccatctctttcagATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACAAAGCTCTCTGAGATGCTTATTACAGGAGATGCTGGACAGGGGTCAACTA
tgcttccatctctttc CT-rich tract
tactaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcagattctttacaacatcatcacaagttcgctctaccattttgtaatgaccatgagatctttcagttcgtactaatatagttgaccatgcttccatctctttcagATGTATGGGGCAAGACCAGTAAGGAGGTGGGTGCAGAAGAATGTGATGACAAAGCTCTCTGAGATGCTTATTACAGGAGATGCTGGACAGGGGTCAACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA