Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatggttttatatttatatcttgataggtttgcacttgttagtagtaaaaattcactaggtgttaatgtgtaattggtactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG

Basic information

species Oryza sativa
transcript LOC_Os02g33080.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g33080.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G073950_T01 (Zea mays), 3'ss of exon 5
-----------------------------------gtaaacatggttttatatttatatcttgataggt--ttgcacttgttagtagtaaaaattcactaggtgttaatgtgta-attggtact-atgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
                                   | ||| |    |  || | ||     |||    |  |||   ||| ||  || |||| ||||||     | ||||  |  | || || | | ||||||||||||||| |||||||| || ||||||||||
gtgattcctgttctataactttatatatattcctggcaaaaaaatatagatgtatacgatgtgacttttaattgtcattgatataagcaaaagttcact-----taaatgcatttactgctattgacgcagGCTTTCAAAACCAAGTATGCCACCATTGGTGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|226698500|gb|GO497078.1|GO497078
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
EST: gi|218484020|gb|FG954038.1|FG954038
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
EST: gi|58682108|gb|CK070795.1|CK070795
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
EST: gi|109974732|gb|DT807075.1|DT807075
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
EST: gi|27577312|gb|CB000007.1|CB000007
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAATT                         GTTTTCAAAACGAAGTATGCTACAATTGGTGTTG
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAA-Ggtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
EST: gi|27576202|gb|CA998896.1|CA998896
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTGGAATTTGTT
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTGGAATTTGTT
EST: gi|38476031|gb|CF960164.1|CF960164
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
EST: gi|55410603|gb|CV722979.1|CV722979
EST:     CAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
genomic: CAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
EST: gi|88440825|gb|CI693394.1|CI693394
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
EST: gi|29671592|gb|CB667867.1|CB667867
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
EST: gi|33795740|gb|CF323739.1|CF323739
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
EST: gi|58679024|gb|CK067711.1|CK067711
EST:     GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAG                         GCTTTCAAAACGAAGTATGCTACAATTGGTGTTGG
genomic: GTTATCAAGAGAAATTTTATTTCAATCCTGGTGACACCGGCTTCAAGgtaaacatgg ... tactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttgttagtagtaaaaattcactaggtgttaatgtgtaattggtactatgcagGCTTTCAAAACGAAGTATGCTACAATTGGTGTTG
                            tgttaat  putative branch site (score: 3)
      ttagtagtaaaaatt  TA-rich tract