1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tatttcaattcttgaattggaatttcagaaagcaggactaaaaaaaatatttaagatcttttcaaaagattgtgtcttttactattttgaatagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACTTATCGCCTGCAACAAACAGTGATTTTCAAGCTAACTTTTCACATCGTAG
species | Oryza sativa |
transcript | LOC_Os02g32610.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG TEST: gi|58691963|gb|CK080650.1|CK080650
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG TEST: gi|58691963|gb|CK080650.1|CK080650
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG TEST: gi|58691963|gb|CK080650.1|CK080650
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG TEST: gi|58691963|gb|CK080650.1|CK080650
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG TEST: gi|58691963|gb|CK080650.1|CK080650
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG TEST: gi|29665412|gb|CB661687.1|CB661687
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcag-
EST: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG GGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACTEST: gi|29664339|gb|CB660614.1|CB660614
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
EST: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG GGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACTEST: gi|29675289|gb|CB671564.1|CB671564
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
EST: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG GGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACTEST: gi|66922784|gb|CX109632.1|CX109632
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
EST: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAG GGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
genomic: TTTCCTTGATTGCCAATCGCTAAATATGATGTTCAATGATCCAGCAGCAGgtcagatcat ... atagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACT
aatatttaagatcttttcaaaagattgtgtcttttactattttgaatagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACTTATCGCCTGCAACAAACAGTGATTTTCAAGCTAACTTTTCACATCGTAG
ttttactattttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttcaattcttgaattggaatttcagaaagcaggactaaaaaaaatatttaagatcttttcaaaagattgtgtcttttactattttgaatagtttcagGGACGGTTGTTGACTTAGATGAGGCCATGGGATCAAATATTGGTCCAAACTTATCGCCTGCAACAAACAGTGATTTTCAAGCTAACTTTTCACATCGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - -attcttg
- - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaagat