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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgttcgaccttgtctatgaaatatttcaattccttagctctgtaatttacacttctgtttttttgcagACCAATCCTTATTTTACCCCCAGCAAATATCGAAGTCAAATACTGTGATTTGTCAGAGACTGAGAAGGATTTCTATGATGCTCTGTTTCGACGATCTAAG

Basic information

species Oryza sativa
transcript LOC_Os02g32570.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32570.2 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G057504_T01 (Zea mays), 3'ss of exon 1
---------------------------------------------------------------------------------------------------------------------------------gcatgttcgacc-ttgtctatgaaatatttcaattccttagctctgtaatttacacttctgtttttttgcagACCAATCCTTATTTTACCCCCAGCAAATATCGAAGTCAAATACTGTGATTTGTCAGAGACTGAGAAGGATTTCTATGATGCTCTGTTTCGACGATCTAAG
                                                                                                                                    | ||  |||  | ||  |   | ||    |||  || || |  |||   |||     | |||| ||||| |||||||||| ||||||||| ||||| || ||||| |||||||||| ||| || ||| ||||||||||||||||||| ||||| |||||| ||||||||
gtatgtttagctttggttatgatgcattttgtctttgtccccttctttttgtggactatataggtgcttaattaaattgctcaaaaggaatacaaccaggtggtgtacattttattcgaaaagcctgcactctattaaaccactctccttttcaaatcaacattttttggcac-ataac--acatgcacgcttttatgcagGCCAATCCTTAATTTACCCCCTGCAAACATTGAAGTAAAATACTGTGTTTTATCTGAGGCTGAGAAGGATTTCTATGAAGCTCTATTTCGAAGATCTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66917088|gb|CX103936.1|CX103936
EST:     AAGCCAATAATGTTGAAAAGGAATAAAAACAGCACAGACAAGGAAGGAAG                         ACCAATCCTTATTTTACCCCCAGCAAATATCGAAGTCAAATACTGTGATTT
genomic: AAGCCAATAATGTTGAGAAGGAATAAAAACAGCACAGACAAGGAAGGAAGgcatgttcga ... ttttttgcagACCAATCCTTATTTTACCCCCAGCAAATATCGAAGTCAAATACTGTGATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgaaatatttcaattccttagctctgtaatttacacttctgtttttttgcagACCAATCCTTATTTTACCCCCAGCAAATATCGAAGTCAAATACTGTGATTTGTCAGAGACTGAGAAGGATTTCTATGATGCTCTGTTTCGACGATCTAAG
                                    cacttctgttttttt  CT-rich tract
     aaatatttcaatt  TA-rich tract