Sequence
atgc intronic sequence ATGC exonic sequencegtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaattatagatttatgaagtttttactctgcttttcagAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAG
Basic information
species | Oryza sativa |
transcript | LOC_Os02g31874.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g31874.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G144254_T06 (Zea mays), 3'ss of exon 4
gtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaattatagatttatgaagtttttactctgcttttcagAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAG
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gtatgtatgattctc---------actttctggtagctggaatgaaaattacaat--aactacatggaatcatgtgactatgaagcttctgctattctttccagAGTCATGGTAGCCACAACATTTATAGTCTTTGGCAACATCTTCTTAGTATCCTTTGGCAACCATCAATCACCTG
upper sequence: LOC_Os02g31874.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G477146_T01 (Zea mays), 3'ss of exon 5
gtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaattata-gatttatgaagtttttactctgcttttcagAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAG
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gtatgtatgtttctg---------actttctcgtagctggaataaaaatcagaat-----tacatggaatcatgtgattaatgaagattttgctcctctttccagAGTCATGGTAGCCACAACGTTTATTGTCTTTGGCAACATCTTCTTAGTATCCTTCGGCAACCATCAATCGCCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58688305|gb|CK076992.1|CK076992EST: TCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGAACATTTCAGTGAA AGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTC
genomic: TCCAATATTGCATTTGCTTACTTTGTGTTGAACAAGACCATTTCAGTGAAgtatgcattg ... tgcttttcagAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaacttccaatacttggaattatagatttatgaagtttttactctgcttttcagAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAG
tttttactctgctttt CT-rich tract
aattatagatttatga TA-rich tract