1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atcatcattctgtaagcgccattgtaacacgctggttaaactctctgggtgctagatgccagcggtatgttatgatttattgtatcattgattcttgcagGCATTTGAGAGGCTGATAGAGAAAATAAAGGGATGGAAGCGCATGCAGGAGCACCCAATATCAATAATCAG
species | Oryza sativa |
transcript | LOC_Os02g30974.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGCTGAAAATCTTCAATGGGCCTCTGAATTTTCCCAGAAACACAAA AEST: gi|5005370|gb|AU070532.1|AU070532
genomic: CCAAAGCTGAAAATCTTCAATGGGCCTCTGAATTTTCCCAGAAACACAAAgtaatctctt ... attcttgcag-
EST: CCAAAGCTGAAAATCTTCAATGGGCCTCTGAATTTTCCCAGAAACACAAA A
genomic: CCAAAGCTGAAAATCTTCAATGGGCCTCTGAATTTTCCCAGAAACACAAAgtaatctctt ... attcttgcag-
tgggtgctagatgccagcggtatgttatgatttattgtatcattgattcttgcagGCATTTGAGAGGCTGATAGAGAAAATAAAGGGATGGAAGCGCATGCAGGAGCACCCAATATCAATAATCAG
cattgat putative branch site (score: 3)
ttcttgc CT-rich tract
tatgttatgatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcatcattctgtaagcgccattgtaacacgctggttaaactctctgggtgctagatgccagcggtatgttatgatttattgtatcattgattcttgcagGCATTTGAGAGGCTGATAGAGAAAATAAAGGGATGGAAGCGCATGCAGGAGCACCCAATATCAATAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - -cattctg
- - - - - - - - - - - - - - -cgctggt
- - - - - - - - - - - - - - - - - - - - - - - -ggtgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg