1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattttctacaatcctatgctttgatcaatactctagatatgtcaattctgttagcttctctgaactttggtctttattttgaagTTGATGCACATGCGATATACGTGAGGAGTCTACCATTAAATGCCACTACGACACAACTGGAGGATGAGTTCAAGAAGTTTGGCACCATAAAACCTGATGG
species | Oryza sativa |
transcript | LOC_Os02g29480.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACTCCTTTTAGTTCTAATGCTGAGAGCAGCAATACGCATGAGCCAGAAG TTGATGCACATGCGATATACGTGAGGAGTCTACCATTCTAATGCCACTACGEST: gi|33794831|gb|CF323295.1|CF323295
genomic: TACTCCTTTTAGTTCTAATGCTGAGAGCAGCAATACGCATGAGCCAGAAGgtattttcta ... tattttgaagTTGATGCACATGCGATATACGTGAGGAGTCTACCATTA-AATGCCACTACG
EST: TACTCCTTTTAGTTCTAATGCTGAGAGCAGCAATACGCATGAGCCAGAAG TTGATGCACATGCGATATACGTGAGGAGTCTACCATTAAATGCCACTACGAEST: gi|87022634|gb|CI293524.1|CI293524
genomic: TACTCCTTTTAGTTCTAATGCTGAGAGCAGCAATACGCATGAGCCAGAAGgtattttcta ... tattttgaagTTGATGCACATGCGATATACGTGAGGAGTCTACCATTAAATGCCACTACGA
EST: CAGCAATACGCATGAGCCAGAAG TTGATGCACATGCGATATACGTGAGGAGTCTACCATTAAATGCCACTACGAEST: gi|25801041|gb|CA757002.1|CA757002
genomic: CAGCAATACGCATGAGCCAGAAGgtattttcta ... tattttgaagTTGATGCACATGCGATATACGTGAGGAGTCTACCATTAAATGCCACTACGA
EST: TACTCCTTTTAGTTCTAATGCTGAGAGCAGCAATACGCATGAGCCAGAAG TTGATGCACATG
genomic: TACTCCTTTTAGTTCTAATGCTGAGAGCAGCAATACGCATGAGCCAGAAGgtattttcta ... tattttgaagTTGATGCACATG
actctagatatgtcaattctgttagcttctctgaactttggtctttattttgaagTTGATGCACATGCGATATACGTGAGGAGTCTACCATTAAATGCCACTACGACACAACTGGAGGATGAGTTCAAGAAGTTTGGCACCATAAAACCTGATGG
tctttatttt CT-rich tract
tttattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttctacaatcctatgctttgatcaatactctagatatgtcaattctgttagcttctctgaactttggtctttattttgaagTTGATGCACATGCGATATACGTGAGGAGTCTACCATTAAATGCCACTACGACACAACTGGAGGATGAGTTCAAGAAGTTTGGCACCATAAAACCTGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT