1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttggaccattgattgccttgatccaactatgaaaaatagtcccaactgccaaacttgcagtctctaactatgactgcactggatccttatccctgacagCCATTGGTCTACCAGTCAGATCGGTCGCAGCGCGGTCACACTGGTGTCGGCTCTATTAGCTCTGGATCACCAAACGGAGGCCATCACACCGGCTCACTGG
species | Oryza sativa |
transcript | LOC_Os02g29010.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
actgccaaacttgcagtctctaactatgactgcactggatccttatccctgacagCCATTGGTCTACCAGTCAGATCGGTCGCAGCGCGGTCACACTGGTGTCGGCTCTATTAGCTCTGGATCACCAAACGGAGGCCATCACACCGGCTCACTGG
ctctaac putative branch site (score: 2)
tccttatccct putative PPT
taactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggaccattgattgccttgatccaactatgaaaaatagtcccaactgccaaacttgcagtctctaactatgactgcactggatccttatccctgacagCCATTGGTCTACCAGTCAGATCGGTCGCAGCGCGGTCACACTGGTGTCGGCTCTATTAGCTCTGGATCACCAAACGGAGGCCATCACACCGGCTCACTGG
- tggacca
- - - - - - - tgccttg
- - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - -actgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - -acttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatcc