1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagttttcagaactaatatggctaagacttctttggtccaatgcagcaatagtgtctcattttttgtggtgaatagATGGCTTCGGTGAGCAAGGCAGGCCAGCCGCTAGAGATGAAGCTGCAATACCCCCTAATGCTACATTGCACATTAATCTTGAATTGGTGTCCTGGAAGGC
species | Oryza sativa |
transcript | LOC_Os02g28980.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAAT ATGGCTTCGGTGAGCAAGGCAGGCCAGCCGCTAGAGATGAAGCTGCAATACEST: gi|58611206|gb|CK038918.1|CK038918
genomic: GAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAATgtgagttttc ... tggtgaatagATGGCTTCGGTGAGCAAGGCAGGCCAGCCGCTAGAGATGAAGCTGCAATAC
EST: GAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAAT ATGGCTTCGGTGAGEST: gi|29634034|gb|CB639043.1|CB639043
genomic: GAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAATgtgagttttc ... tggtgaatagATGGCTTCGGTGAG
EST: GAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAAT ATGGCTTCCGTGAEST: gi|29665076|gb|CB661351.1|CB661351
genomic: GAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAATgtgagttttc ... tggtgaatagATGGCTTCGGTGA
EST: GAAGACTATGAAGAACAATGAGAAGGCCCTCCTCACAGTCAAACCACAAT ATGGCTTCGGTGAGCAAGGCATGCCATCCGCTAGAGATGAAGCTGCAATACEST: gi|58596426|gb|CK006954.1|CK006954
genomic: GAAGACTATGAAGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAATgtgagttttc ... tggtgaatagATGGCTTCGGTGAGCAAGGCAGGCCAGCCGCTAGAGATGAAGCTGCAATAC
EST: AGAAGAATGAGAAGG-CCTCCTCACAGTCAAACCACAAT ATGGCTTCGGTGAGCAA-GCAGGCCAGCCGCTAGAGATGAAGCTGCAATAC
genomic: AGAAGAATGAGAAGGCCCTCCTCACAGTCAAACCACAATgtgagttttc ... tggtgaatagATGGCTTCGGTGAGCAAGGCAGGCCAGCCGCTAGAGATGAAGCTGCAATAC
ctaagacttctttggtccaatgcagcaatagtgtctcattttttgtggtgaatagATGGCTTCGGTGAGCAAGGCAGGCCAGCCGCTAGAGATGAAGCTGCAATACCCCCTAATGCTACATTGCACATTAATCTTGAATTGGTGTCCTGGAAGGC
ttttttgt CT-rich tract
tcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcagaactaatatggctaagacttctttggtccaatgcagcaatagtgtctcattttttgtggtgaatagATGGCTTCGGTGAGCAAGGCAGGCCAGCCGCTAGAGATGAAGCTGCAATACCCCCTAATGCTACATTGCACATTAATCTTGAATTGGTGTCCTGGAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG