1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttattagacttaatctagttttgtgccttaattagcattttgtttgccttgtccttagtgaactctatttatagtgttgatttttacatttttgaacagGTGTATGCATTCTTGGCTCCAAAAATAATTGGGGGAGTGAATGCTCCAACACCAGTCGGTGAACTAGGGATGAATCAAATGACTCAAGCGATTGATTTAA
species | Oryza sativa |
transcript | LOC_Os02g27340.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGGTGGGACCCTAGCAGCTTCTGCTATATCTGCAAGTGTTATTCATAAG GTGTATGCATTCTTGGCTCCAAAAATAATTGGGGGAGTGAATGCTCCAACAEST: gi|29664828|gb|CB661103.1|CB661103
genomic: GTGGTGGGACCCTAGCAGCTTCTGCTATATCTGCAAGTGTTATTCATAAGgtaaatgttt ... ttttgaacagGTGTATGCATTCTTGGCTCCAAAAATAATTGGGGGAGTGAATGCTCCAACA
EST: GCAGCTTCTGCTATATCTGCAAGTGTTATTCATAAG GTGTATGCATTCTTGGCTCCAAAAATAATTGGGGGAGTGAATGCTCCAACA
genomic: GCAGCTTCTGCTATATCTGCAAGTGTTATTCATAAGgtaaatgttt ... ttttgaacagGTGTATGCATTCTTGGCTCCAAAAATAATTGGGGGAGTGAATGCTCCAACA
tgccttgtccttagtgaactctatttatagtgttgatttttacatttttgaacagGTGTATGCATTCTTGGCTCCAAAAATAATTGGGGGAGTGAATGCTCCAACACCAGTCGGTGAACTAGGGATGAATCAAATGACTCAAGCGATTGATTTAA
tgttgat putative branch site (score: 11)
cattttt putative PPT
tatttatagtgttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattagacttaatctagttttgtgccttaattagcattttgtttgccttgtccttagtgaactctatttatagtgttgatttttacatttttgaacagGTGTATGCATTCTTGGCTCCAAAAATAATTGGGGGAGTGAATGCTCCAACACCAGTCGGTGAACTAGGGATGAATCAAATGACTCAAGCGATTGATTTAA
- - - - - - - - - - - -gtgcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat