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gtttgtggtttcttttgttgtaactttgctcagtagggcattgaattagatggtttctatatcatttttcttctatgatatacaatctgaaacatatggtcgtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAG
species | Oryza sativa |
transcript | LOC_Os02g19510.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACAEST: gi|88360895|gb|CI625201.1|CI625201
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACTEST: gi|428279|gb|D24427.1|D24427
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACAEST: gi|29646523|gb|CB651530.1|CB651530
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACAEST: gi|428340|gb|D24488.1|D24488
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACAEST: gi|29673248|gb|CB669523.1|CB669523
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACAEST: gi|29624841|gb|CB629852.1|CB629852
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACAEST: gi|29676038|gb|CB672313.1|CB672313
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGGTACTTTTACAGTTGGAATTACAEST: gi|29673598|gb|CB669873.1|CB669873
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTEST: gi|29640936|gb|CB645943.1|CB645943
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGT
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACAEST: gi|58670226|gb|CK058912.1|CK058912
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATCGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAAEST: gi|58691339|gb|CK080026.1|CK080026
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACAEST: gi|66913022|gb|CX099870.1|CX099870
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACAEST: gi|87006680|gb|CI285714.1|CI285714
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
EST: TTTCTGAAACAGATCTTTTTCCACGGAGGTTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTEST: gi|33675555|gb|CF303794.1|CF303794
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGT
EST: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAG GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
genomic: TTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTAGTGAGgtttgtggtt ... gtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACA
ctatatcatttttcttctatgatatacaatctgaaacatatggtcgtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAG
atttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtggtttcttttgttgtaactttgctcagtagggcattgaattagatggtttctatatcatttttcttctatgatatacaatctgaaacatatggtcgtactgtcagGACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT