1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgaatgtttcttcttgatcttctcatgtaatcaagtatggtttgcacaatgcactgctgaatttgggcctggcctgattacaccatttgttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTATGCGTCATGGGTGCAGTGACGTTGCAATACTGCTGGCAAATGGTATGGC
species | Oryza sativa |
transcript | LOC_Os02g17280.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGTGATCAAGTATTTGTCCCACTTGTTCATCTGATTGCTTCTGTAATG ACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTAEST: gi|86546412|gb|CI186618.1|CI186618
genomic: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGgtaagaacta ... ttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTA
EST: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATG ACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTAEST: gi|88255900|gb|CI354724.1|CI354724
genomic: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGgtaagaacta ... ttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTA
EST: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATG ACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTAEST: gi|88296751|gb|CI540103.1|CI540103
genomic: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGgtaagaacta ... ttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTA
EST: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATG ACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTAEST: gi|88205852|gb|CI205701.1|CI205701
genomic: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGgtaagaacta ... ttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTA
EST: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATG ACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTAEST: gi|88488734|gb|CI426005.1|CI426005
genomic: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGgtaagaacta ... ttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTA
EST: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATG ACACTAATCAATCTTGCACCTNNNNNNNCTGCGTAATTGGTACACCACTATEST: gi|89187835|gb|CI009819.1|CI009819
genomic: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGgtaagaacta ... ttcatttcagACACTAATCAATCTTGCACCT--GGGGGCTGCGTAATTGGTACACCACTAT
EST: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATG ACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTAEST: gi|86886214|gb|CI321250.1|CI321250
genomic: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGgtaagaacta ... ttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTA
EST: GAAATGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATG ACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTAEST: gi|88273370|gb|CI393776.1|CI393776
genomic: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGgtaagaacta ... ttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTA
EST: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATG ACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTAEST: gi|396941389|gb|HO188598.1|HO188598
genomic: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGgtaagaacta ... ttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTA
EST: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATG ACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTA
genomic: GAAGTGATCAAGTATTTGTCCCAGTTGTTCATCTGATTGCTTCTGTAATGgtaagaacta ... ttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTA
cacaatgcactgctgaatttgggcctggcctgattacaccatttgttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTATGCGTCATGGGTGCAGTGACGTTGCAATACTGCTGGCAAATGGTATGGC
gcctgat putative branch site (score: 26)
ttcatttc putative PPT
tgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgtttcttcttgatcttctcatgtaatcaagtatggtttgcacaatgcactgctgaatttgggcctggcctgattacaccatttgttcatttcagACACTAATCAATCTTGCACCTGGGGGCTGCGTAATTGGTACACCACTATTATGCGTCATGGGTGCAGTGACGTTGCAATACTGCTGGCAAATGGTATGGC
gtgaatg
- - - - - cttcttg
- - - - - - - - - - - - catgtaa
- - - - - - - - - - - - - - - - - - - - gtttgca
- - - - - - - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatttg