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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaatatcattggacaagaatggataaaaatcgaggaacaagtcttctttgcaaaatgctaaaaaaaaataaatgagtacaaatattctggtttgtacagGTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGGTATGTGTAGAAATTCACTTGGTTGACATCT

Basic information

species Oryza sativa
transcript LOC_Os02g15870.4
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33654217|gb|CF276831.1|CF276831
EST:     GACTATTGGCTGATGGCAACTTGAAAGTGTGCTTATTTGGCCCCTCAGAG                         GTGAGCCTGAGAGAGCCTATTCGAGTTGGTGTTGATGATGCTGGACTCAGA
genomic: GACTATTGGCTGATGGCAACTTGAAAGTGTGCTTATTTGGCCCCTCAGAGgtatgctaac ... gtttgtacagGTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGA
EST: gi|29629540|gb|CB634549.1|CB634549
EST:     GACTATTGGCTGATGGCAACTTGAAAGTGTGCTTATTTGGCCCCTCAGAG                         GTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGA
genomic: GACTATTGGCTGATGGCAACTTGAAAGTGTGCTTATTTGGCCCCTCAGAGgtatgctaac ... gtttgtacagGTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgcaaaatgctaaaaaaaaataaatgagtacaaatattctggtttgtacagGTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGGTATGTGTAGAAATTCACTTGGTTGACATCT
           tgctaaa  putative branch site (score: 2)
       aaaatgctaaaaaaaa  TA-rich tract