1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaatatcattggacaagaatggataaaaatcgaggaacaagtcttctttgcaaaatgctaaaaaaaaataaatgagtacaaatattctggtttgtacagGTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGGTATGTGTAGAAATTCACTTGGTTGACATCT
species | Oryza sativa |
transcript | LOC_Os02g15870.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACTATTGGCTGATGGCAACTTGAAAGTGTGCTTATTTGGCCCCTCAGAG GTGAGCCTGAGAGAGCCTATTCGAGTTGGTGTTGATGATGCTGGACTCAGAEST: gi|29629540|gb|CB634549.1|CB634549
genomic: GACTATTGGCTGATGGCAACTTGAAAGTGTGCTTATTTGGCCCCTCAGAGgtatgctaac ... gtttgtacagGTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGA
EST: GACTATTGGCTGATGGCAACTTGAAAGTGTGCTTATTTGGCCCCTCAGAG GTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGA
genomic: GACTATTGGCTGATGGCAACTTGAAAGTGTGCTTATTTGGCCCCTCAGAGgtatgctaac ... gtttgtacagGTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGA
tctttgcaaaatgctaaaaaaaaataaatgagtacaaatattctggtttgtacagGTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGGTATGTGTAGAAATTCACTTGGTTGACATCT
tgctaaa putative branch site (score: 1)
aaaatgctaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatatcattggacaagaatggataaaaatcgaggaacaagtcttctttgcaaaatgctaaaaaaaaataaatgagtacaaatattctggtttgtacagGTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGAGAAATAATAAGCGCTGCGGTATGTGTAGAAATTCACTTGGTTGACATCT
- - - - - - gacaagaa
- - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - -gaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattctg