1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcctactcttctgaatgaacttcagagatatgaacaacgttccttttcgatgacaagctcttactgttgtgctgcttacagGACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTTGCTCCAAAGGAGCTTGTTGATGAAATAAAG
species | Oryza sativa |
transcript | LOC_Os02g15750.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAG GACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTTEST: gi|29688439|gb|CB684714.1|CB684714
genomic: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAGgtgcctactc ... ctgcttacagGACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTT
EST: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAG GACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTTEST: gi|29613783|gb|CB618796.1|CB618796
genomic: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAGgtgcctactc ... ctgcttacagGACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTT
EST: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAA GACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCEST: gi|29689177|gb|CB685452.1|CB685452
genomic: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAGgtgcctactc ... ctgcttacagGACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTC
EST: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAG GACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTTEST: gi|325493442|gb|JG457966.1|JG457966
genomic: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAGgtgcctactc ... ctgcttacagGACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTT
EST: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAG GACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTTEST: gi|33684345|gb|CF312584.1|CF312584
genomic: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAGgtgcctactc ... ctgcttacagGACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTT
EST: GGTCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAG GACCGAAAGAGAACCCTTAAACAGATCGATGATTTCT
genomic: G-TCAGCTGCCATTGTCCAGCTAGTTGCAAGCAAACTCATATATGCTGAGgtgcctactc ... ctgcttacagGACCGAAAGAGAACCCTTAAACAGATCGATGATTTCT
gatatgaacaacgttccttttcgatgacaagctcttactgttgtgctgcttacagGACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTTGCTCCAAAGGAGCTTGTTGATGAAATAAAG
ctcttac putative branch site (score: 115)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctactcttctgaatgaacttcagagatatgaacaacgttccttttcgatgacaagctcttactgttgtgctgcttacagGACCGAAAGAGAACCCTTAAACAGATCGATGATTTCTTCAACAAAAAGGTTGCTCCAAAGGAGCTTGTTGATGAAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT