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gtaaggactccatttattttttttccattagaggtgaaattaacacttttgacagactcgaaattgattgtcttaaattattttcttccttttatccttacttctatagaaaattttagtttggtcactaatgttctttggacctaccaaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGACATGGTTCTGTGGAGTCAATTGATATATGTGAAATTGATCAGCTAGTTA
species | Oryza sativa |
transcript | LOC_Os02g15550.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAA GTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGAEST: gi|58602035|gb|CK012563.1|CK012563
genomic: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGA
EST: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAA GTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGAEST: gi|58695758|gb|CK084445.1|CK084445
genomic: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGA
EST: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAA GTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGAEST: gi|29642051|gb|CB647058.1|CB647058
genomic: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGA
EST: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAA GTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGAEST: gi|29672898|gb|CB669173.1|CB669173
genomic: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGA
EST: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAA GTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGAEST: gi|218497953|gb|FG959345.1|FG959345
genomic: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGA
EST: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAA GTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAAAEST: gi|11025755|gb|AU162356.1|AU162356
genomic: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGA
EST: GGAAATGATTACTCACCTTCCG-TTTGCTCAATTCCATCCCCAAAAGANA GTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTTCGGGAGATATGTAEST: gi|33793719|gb|CF322742.1|CF322742
genomic: GGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAA-GAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTT-CGGGAGATATGTA
EST: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAA GTTTTGGTTATTGGAGGTGGTGATGNGTGGAGTCCTTCGGGAGATATGTAGEST: gi|29664250|gb|CB660525.1|CB660525
genomic: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATG-GTGGAGTCCTTCGGGAGATATGTAG
EST: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAA GTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGAEST: gi|33794317|gb|CF323046.1|CF323046
genomic: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGA
EST: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAA GTTTTGGTTATTGGAGGTGGTGATGNGTGGAGTCCTTCGGGAGATATGTAGEST: gi|84117386|gb|CD151153.1|CD151153
genomic: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATG-GTGGAGTCCTTCGGGAGATATGTAG
EST: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAA GTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGA
genomic: AGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAgtaaggactc ... caaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGA
tctatagaaaattttagtttggtcactaatgttctttggacctaccaaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGACATGGTTCTGTGGAGTCAATTGATATATGTGAAATTGATCAGCTAGTTA
cactaat putative branch site (score: 31)
agaaaattttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggactccatttattttttttccattagaggtgaaattaacacttttgacagactcgaaattgattgtcttaaattattttcttccttttatccttacttctatagaaaattttagtttggtcactaatgttctttggacctaccaaatttcagGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGACATGGTTCTGTGGAGTCAATTGATATATGTGAAATTGATCAGCTAGTTA
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