1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atgtatgcttgatctgttttgttgctgtacttaagcagttgtctgcatgagcaaatttcatttgatttatgcccttctaatacacgtatgtattctttagCTGGTGAAATGCTCCATGTTGCGCAAGCATTCATCGACAAGAACTACCATCCCACCGTTATTTGTAGAG
species | Oryza sativa |
transcript | LOC_Os02g14929.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACACAGGATGAAGAAGTAGGAGATGGCACGACATCTGTTATTGTTCTTG CTGGTGAAATGCTCCATGTTGCGCAAGCATTCATCGACAAGAACTACEST: gi|88334932|gb|CI648707.1|CI648707
genomic: CACACAGGATGAAGAAGTAGGAGATGGCACGACATCTGTTATTGTTCTTGgtatgccgtt ... tattctttagCTGGTGAAATGCTCCATGTTGCGCAAGCATTCATCGACAAGAACTAC
EST: CACACAGGATGAAGAAGTAGGAGATGGCACGACATCTGTTATTGTTCTTG CTGGTGAAATGCTCCATGTTGCGCAAGCATTCATCGACAAGAACT
genomic: CACACAGGATGAAGAAGTAGGAGATGGCACGACATCTGTTATTGTTCTTGgtatgccgtt ... tattctttagCTGGTGAAATGCTCCATGTTGCGCAAGCATTCATCGACAAGAACT
catgagcaaatttcatttgatttatgcccttctaatacacgtatgtattctttagCTGGTGAAATGCTCCATGTTGCGCAAGCATTCATCGACAAGAACTACCATCCCACCGTTATTTGTAGAG
ttctaat putative branch site (score: 5)
tattcttt putative PPT
aaatttcatttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtatgcttgatctgttttgttgctgtacttaagcagttgtctgcatgagcaaatttcatttgatttatgcccttctaatacacgtatgtattctttagCTGGTGAAATGCTCCATGTTGCGCAAGCATTCATCGACAAGAACTACCATCCCACCGTTATTTGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-tgtatgc
- - - - -tgatctg
- - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - gcagttg
- - - - - - - - - - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatt