1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgataattattggatcacatagttcaagtctacctgtagagcttactaccggcatttccttttacacatcaacaacatgtaatgctcttttctgtacagACGGAAGATGAAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAGATAAGAAG
species | Oryza sativa |
transcript | LOC_Os02g14760.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCCTTCCAAAACAGCTATTCTGCCTGTGAATCCTAAATTTCTTCCTCGG ACGGAAGATGAAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAEST: gi|58681741|gb|CK070428.1|CK070428
genomic: TGCCTTCCAAAACAGCTATTCTGCCTGTGAATCCTAAATTTCTTCCTCGGgtatgataat ... ttctgtacagACGGAAGATGAAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATA
EST: TGCCTTCCAAAACAGCTATTCTGCCTGTGAATCCTAAATTTCTTCCTCGG ACGGAAGATGAAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAEST: gi|58594687|gb|CF992995.1|CF992995
genomic: TGCCTTCCAAAACAGCTATTCTGCCTGTGAATCCTAAATTTCTTCCTCGGgtatgataat ... ttctgtacagACGGAAGATGAAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATA
EST: TGCCGTCCAAAACAGCTATTCTGCCTGTGAATCCTAAATTTCTTCCTCGG ACGGAAGATGAAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATA
genomic: TGCCTTCCAAAACAGCTATTCTGCCTGTGAATCCTAAATTTCTTCCTCGGgtatgataat ... ttctgtacagACGGAAGATGAAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATA
actaccggcatttccttttacacatcaacaacatgtaatgctcttttctgtacagACGGAAGATGAAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAGATAAGAAG
agcttac putative branch site (score: 3)
tgctcttttct putative PPT
ttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgataattattggatcacatagttcaagtctacctgtagagcttactaccggcatttccttttacacatcaacaacatgtaatgctcttttctgtacagACGGAAGATGAAAAAGAGATGGTCTCAAGGACTGTATATTGTACTAACATAGATAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG