1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atatgtgtatggctctctgttgatgtcaatatcttctatgtatggtggtatagtacaactacctgcaaaattcaaggtttaacaattattccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
species | Oryza sativa |
transcript | LOC_Os02g13990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGACCAAATCACAGCTATCAAG GGTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAACGEST: gi|88201604|gb|CI201959.1|CI201959
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: TCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|86545114|gb|CI185320.1|CI185320
genomic: TCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|88227188|gb|CI228301.1|CI228301
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: TCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|86500747|gb|CI143380.1|CI143380
genomic: TCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|86421117|gb|CI057106.1|CI057106
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: ACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|29660695|gb|CB656970.1|CB656970
genomic: ACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGNCAGGGCTTGEST: gi|86536011|gb|CI176217.1|CI176217
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTG-CAAGGCTTG
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|86503360|gb|CI145993.1|CI145993
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCATAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCCAAGGCTTGAAAAEST: gi|5005007|gb|AU068324.1|AU068324
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTG-CAAGGCTTGAAAA
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|88223197|gb|CI223046.1|CI223046
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: CAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|88830705|gb|CI078149.1|CI078149
genomic: CAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|88252358|gb|CI350786.1|CI350786
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: ACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|86505850|gb|CI148483.1|CI148483
genomic: ACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: CTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|29663404|gb|CB659679.1|CB659679
genomic: CTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGANGAGGTTGCAAGGCTTGAAAAGEST: gi|86496623|gb|CI139256.1|CI139256
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|86500143|gb|CI142776.1|CI142776
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAGEST: gi|29663405|gb|CB659680.1|CB659680
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
EST: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAG GCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
genomic: AGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgc ... ccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
tggtatagtacaactacctgcaaaattcaaggtttaacaattattccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
gtttaac putative branch site (score: 3)
ttccatct putative PPT
tttaacaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgtgtatggctctctgttgatgtcaatatcttctatgtatggtggtatagtacaactacctgcaaaattcaaggtttaacaattattccatctgcagGCTGCCATTGTGAATTCTCAGACACTTGAGGAGGTTGCAAGGCTTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - gtgtatg
- - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - -atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acctgca