1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gtatgctttcccacctcatcgcttacttctgtttgatataccatcttgctaatataatcatccccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCGACGATATGTTCATACGTGTGTACAATTACAATACGATGGATAAGGTCAA
species | Oryza sativa |
transcript | LOC_Os02g11830.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAGACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAG TTCGGTCATCTAAATTTATCGCACGGAAACAATGGGTAGTTGCTGGTGCCGEST: gi|29613909|gb|CB618922.1|CB618922
genomic: GCAGACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAGgtatgctttc ... cccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCG
EST: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAG TTCGGTCATCTAAATTTATCGCACGGAAACAATGGGTAGTTGCTGGTGCCGEST: gi|88349632|gb|CI632767.1|CI632767
genomic: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAGgtatgctttc ... cccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCG
EST: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAG TTCGGTCATCTAAATTTATCACACGGAAEST: gi|88348222|gb|CI637683.1|CI637683
genomic: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAGgtatgctttc ... cccatttcagTTCGGTCATCTAAATTTATCACACGGAA
EST: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAG TTCGGTCATCTAAATTTATCACACGGEST: gi|58685502|gb|CK074189.1|CK074189
genomic: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAGgtatgctttc ... cccatttcagTTCGGTCATCTAAATTTATCACACGG
EST: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAG TTCGGTCATCTAAATTTATCGCACGGAAACAATGGGTAGTTGCTGGTGCCGEST: gi|58601041|gb|CK011569.1|CK011569
genomic: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAGgtatgctttc ... cccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCG
EST: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAG TTCGGTCATCTAAATTTATCGCACGGAAACAATGGGTAGTTGCTGGTGCCGEST: gi|29680636|gb|CB676911.1|CB676911
genomic: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAGgtatgctttc ... cccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCG
EST: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAG TTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCGEST: gi|88575756|gb|CI669901.1|CI669901
genomic: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAGgtatgctttc ... cccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCG
EST: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAG TTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCGEST: gi|3760098|gb|C97356.1|C97356
genomic: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAGgtatgctttc ... cccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCG
EST: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAG TTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCGEST: gi|29671006|gb|CB667281.1|CB667281
genomic: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAGgtatgctttc ... cccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCG
EST: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAG TTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCG
genomic: ACGATGGTGAAATCATTTGAAGTCACAGAGTTACCAGgtatgctttc ... cccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCG
atcgcttacttctgtttgatataccatcttgctaatataatcatccccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCGACGATATGTTCATACGTGTGTACAATTACAATACGATGGATAAGGTCAA
tgctaat putative branch site (score: 66)
tccccatttc putative PPT
taatataatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttcccacctcatcgcttacttctgtttgatataccatcttgctaatataatcatccccatttcagTTCGGTCATCTAAATTTATCACACGGAAACAATGGGTAGTTGCTGGTGCCGACGATATGTTCATACGTGTGTACAATTACAATACGATGGATAAGGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA