1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaactgagcaaaaataccctgagttcttctattatagtgaaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCTGCTAGGATGGAGTCTGGAACTGGCAACGGTGACAGTGAAGTCCAGCGA
species | Oryza sativa |
transcript | LOC_Os02g11050.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCGTGAACTCTTTGTTATGGCCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGACEST: gi|29626059|gb|CB631070.1|CB631070
genomic: CCGTGAACTCTTTGTTATGG-CCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGAT
EST: ATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|58673687|gb|CK062373.1|CK062373
genomic: ATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|163918429|gb|EG711419.1|EG711419
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|5667189|gb|AU077449.1|AU077449
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: TCTTTGTTATGGCCAG GGAACATGCACCCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATEST: gi|29688287|gb|CB684562.1|CB684562
genomic: TCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCA-CCATCCATTATTTTCATGGATGAAATAGACTCCATTGGAT
EST: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|29678518|gb|CB674793.1|CB674793
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: GATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|29616715|gb|CB621727.1|CB621727
genomic: GATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|38480816|gb|CF964905.1|CF964905
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|58599645|gb|CK010173.1|CK010173
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAN GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|29673581|gb|CB669856.1|CB669856
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|58678290|gb|CK066977.1|CK066977
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|27576305|gb|CA998999.1|CA998999
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|218502167|gb|FG956639.1|FG956639
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: CGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|29659206|gb|CB655481.1|CB655481
genomic: CGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: GTTATGGCCAG GGAACATGCACCATCCATTATTTTTCATGGATGAAATAGACTCCATTGGATEST: gi|29658747|gb|CB655022.1|CB655022
genomic: GTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTA-TTTTCATGGATGAAATAGACTCCATTGGAT
EST: GTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCEST: gi|29687574|gb|CB683849.1|CB683849
genomic: GTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
EST: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAG GGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
genomic: TACATTGGTGAGGGTTCTCGGATGGTCCGTGAACTCTTTGTTATGGCCAGgtaaactgag ... catattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATC
tacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCTGCTAGGATGGAGTCTGGAACTGGCAACGGTGACAGTGAAGTCCAGCGA
ggttaac putative branch site (score: 79)
ttaacatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactgagcaaaaataccctgagttcttctattatagtgaaagcattattggcttgcaatctgaactatagttctacatatgcactctgttgtcagtgtaggcttaattgtttggttaacatattacagGGAACATGCACCATCCATTATTTTCATGGATGAAATAGACTCCATTGGATCTGCTAGGATGGAGTCTGGAACTGGCAACGGTGACAGTGAAGTCCAGCGA
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