1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgttctgcaaattgaactgaagaaatagcttaaaaaaatgttctcctatggtgtttcagttatatcaaatgacacatacagttaattacaattcttcagGTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATTGTTTCTCATCAGTCTAGCGACTCCGGGAAACATGCAGGCAGTGCCTCCCATTCT
species | Oryza sativa |
transcript | LOC_Os02g10480.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATNGTTTCEST: gi|87005483|gb|CI285705.1|CI285705
genomic: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtattttatt ... aattcttcagGTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATTGTTTC
EST: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATTGTTTCEST: gi|58656726|gb|CK045406.1|CK045406
genomic: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtattttatt ... aattcttcagGTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATTGTTTC
EST: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAG GTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATGGTTTC
genomic: AGCAAGCCACATCCAGATTCTACCCAGGAAGAGCGAGAAAAATTCATCAGgtattttatt ... aattcttcagGTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATTGTTTC
cctatggtgtttcagttatatcaaatgacacatacagttaattacaattcttcagGTCAAAATATGAGTTACAAGAGTTTCTTGAGCCAAGCCTACGGATTGTTTCTCATCAGTCTAGCGACTCCGGGAAACATGCAGGCAGTGCCTCCCATTCT
agttaat putative branch site (score: 4)
ttcttc putative PPT
ttaattacaattctt TA-rich tract