1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tcttgcttaaaggtataaaacatttatcgttagcctcagcatgtaatttattcctggcaaatgctaaggattgatttgatgatttgattgttctatgcagGGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTTGGGAAACTATCAAAATTAGGACTCGCCCCTCTTCTTTGGTGTATTATTA
species | Oryza sativa |
transcript | LOC_Os02g09130.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGCCCAACTTGCTGCTGATAAAAATCATCGGCAAGTTGCCTTTTTCCTT GGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTTEST: gi|88592856|gb|CI710985.1|CI710985
genomic: CAGCCCAACTTGCTGCTGATAAAAATCATCGGCAAGTTGCCTTTTTCCTTgtgagtgcta ... ttctatgcagGGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTT
EST: CAGCCCAACTTGCTGCTGATAAAAATCATCGGCAAGTTGCCTTTTTCCTT GGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTTEST: gi|88458185|gb|CI695145.1|CI695145
genomic: CAGCCCAACTTGCTGCTGATAAAAATCATCGGCAAGTTGCCTTTTTCCTTgtgagtgcta ... ttctatgcagGGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTT
EST: CAGCCCAACTTGCTGCTGATAAAAATCATCGGCAAGTTGCCTTTTTCCTT GGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTTEST: gi|88381559|gb|CI682217.1|CI682217
genomic: CAGCCCAACTTGCTGCTGATAAAAATCATCGGCAAGTTGCCTTTTTCCTTgtgagtgcta ... ttctatgcagGGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTT
EST: CAGCCCAACTTGCTGCTGATAAAAATCATCGGCAAGTTGCCTTTTTCCTT GGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTT
genomic: CAGCCCAACTTGCTGCTGATAAAAATCATCGGCAAGTTGCCTTTTTCCTTgtgagtgcta ... ttctatgcagGGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTT
atttattcctggcaaatgctaaggattgatttgatgatttgattgttctatgcagGGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTTGGGAAACTATCAAAATTAGGACTCGCCCCTCTTCTTTGGTGTATTATTA
ttgttct CT-rich tract
attgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgcttaaaggtataaaacatttatcgttagcctcagcatgtaatttattcctggcaaatgctaaggattgatttgatgatttgattgttctatgcagGGGAATGCTAGAAGAGTACATGAGAGAGGATGTGGTGGGAACAGTTATTTTGGGAAACTATCAAAATTAGGACTCGCCCCTCTTCTTTGGTGTATTATTA
- -tgcttaa
- - - - - - - ataaaaca
- - - - - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg